miRNA display CGI


Results 81 - 100 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 65396 0.69 0.655741
Target:  5'- cGGcgGGUugGGCGgcCCCGGCAGCuCCAc-- -3'
miRNA:   3'- -UCuaCCA--CCGC--GGGCCGUUG-GGUuug -5'
23783 5' -57.5 NC_005261.1 + 22650 0.69 0.666003
Target:  5'- uAGAcgcgcUGGcGGCGCCUgGGCGgcGCCCGAGu -3'
miRNA:   3'- -UCU-----ACCaCCGCGGG-CCGU--UGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 94292 0.69 0.666003
Target:  5'- cAGAgcaUGGCGUagUCGGCGACCCAGGg -3'
miRNA:   3'- -UCUaccACCGCG--GGCCGUUGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 76593 0.69 0.666003
Target:  5'- gAGcgGGUGGCGCgCGcGCugccGCCCGc-- -3'
miRNA:   3'- -UCuaCCACCGCGgGC-CGu---UGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 36835 0.7 0.553399
Target:  5'- cGGUGccGGCGCCCGGgggcUAGCCCGcGCu -3'
miRNA:   3'- uCUACcaCCGCGGGCC----GUUGGGUuUG- -5'
23783 5' -57.5 NC_005261.1 + 2982 0.7 0.583836
Target:  5'- gAGGcUGG-GGCucgGCCUGGCGGCCCGGc- -3'
miRNA:   3'- -UCU-ACCaCCG---CGGGCCGUUGGGUUug -5'
23783 5' -57.5 NC_005261.1 + 50648 0.7 0.583836
Target:  5'- ---gGGUGGCG-CCGGCGaacgcgcucGCCCAAGu -3'
miRNA:   3'- ucuaCCACCGCgGGCCGU---------UGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 92012 0.7 0.604315
Target:  5'- cAGGUGGaUGGCcuuGCCCGGgAACaCCAcguACa -3'
miRNA:   3'- -UCUACC-ACCG---CGGGCCgUUG-GGUu--UG- -5'
23783 5' -57.5 NC_005261.1 + 27251 0.71 0.509686
Target:  5'- gGGGUGGggcggggugugcgGGCaGCCCGGCcggccCCCGGACc -3'
miRNA:   3'- -UCUACCa------------CCG-CGGGCCGuu---GGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 58311 0.71 0.513604
Target:  5'- gGGAgGG-GGCgGCCCaGCcGCCCGAGCa -3'
miRNA:   3'- -UCUaCCaCCG-CGGGcCGuUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 71217 0.71 0.533369
Target:  5'- cGAUGGUGcGCGCgCGcacGCGGCCCucGGCg -3'
miRNA:   3'- uCUACCAC-CGCGgGC---CGUUGGGu-UUG- -5'
23783 5' -57.5 NC_005261.1 + 83750 0.71 0.533369
Target:  5'- gAGGUGGcgGcGCGCCaCGGCcgggucgcagcGCCCGAGCa -3'
miRNA:   3'- -UCUACCa-C-CGCGG-GCCGu----------UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 132621 0.71 0.542352
Target:  5'- cAGggGGcgcUGGCGCCgaggacgcgggcgCGGCGGCCCuAGCg -3'
miRNA:   3'- -UCuaCC---ACCGCGG-------------GCCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 60390 0.72 0.456291
Target:  5'- gAGGUGcGccuccaUGGCGCCgGGcCGGCCCGGGCc -3'
miRNA:   3'- -UCUAC-C------ACCGCGGgCC-GUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 74456 0.72 0.456291
Target:  5'- gGGGUGGgGGCGCCgcccccggcgCGGCGuGCCUggGCg -3'
miRNA:   3'- -UCUACCaCCGCGG----------GCCGU-UGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 14535 0.72 0.456291
Target:  5'- cGGUGGcgcGGcCGCCCGGCGACCa---- -3'
miRNA:   3'- uCUACCa--CC-GCGGGCCGUUGGguuug -5'
23783 5' -57.5 NC_005261.1 + 43299 0.72 0.456291
Target:  5'- cGcgGGgGGCG-CCGGCAGCCCGGc- -3'
miRNA:   3'- uCuaCCaCCGCgGGCCGUUGGGUUug -5'
23783 5' -57.5 NC_005261.1 + 39379 0.72 0.465612
Target:  5'- cGGccGGggagGGCgGCCCuggcGGCGACCCGAGCc -3'
miRNA:   3'- -UCuaCCa---CCG-CGGG----CCGUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 122141 0.72 0.47503
Target:  5'- cAGGUGGUGGUGCaCGGcCGACgCCAGc- -3'
miRNA:   3'- -UCUACCACCGCGgGCC-GUUG-GGUUug -5'
23783 5' -57.5 NC_005261.1 + 75843 0.72 0.465612
Target:  5'- gGGAgGGgcgcgcGGCGCCgaCGGCGGCCCcGACg -3'
miRNA:   3'- -UCUaCCa-----CCGCGG--GCCGUUGGGuUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.