miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 18533 0.67 0.775049
Target:  5'- uGAcGGcGGCGUCCcGCGGCCCGcugGGCa -3'
miRNA:   3'- uCUaCCaCCGCGGGcCGUUGGGU---UUG- -5'
23783 5' -57.5 NC_005261.1 + 72446 0.67 0.775049
Target:  5'- cGGcgGG-GGCGCCCgcggcgagcgcGGCGAgCgCGAGCg -3'
miRNA:   3'- -UCuaCCaCCGCGGG-----------CCGUUgG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 125418 0.67 0.775049
Target:  5'- cGcgGGcGGCGCUCaGGCcGCCCAu-- -3'
miRNA:   3'- uCuaCCaCCGCGGG-CCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 100277 0.67 0.756021
Target:  5'- ---cGGUGGCGCacgaagCGGCAGaaggcCCCAAAg -3'
miRNA:   3'- ucuaCCACCGCGg-----GCCGUU-----GGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 87596 0.67 0.756021
Target:  5'- cGGUGGUcuuGGUG-CCGGCGACCaccGCg -3'
miRNA:   3'- uCUACCA---CCGCgGGCCGUUGGguuUG- -5'
23783 5' -57.5 NC_005261.1 + 35703 0.67 0.736551
Target:  5'- cGGUGGgccgGGgGCUCGGUggcGGCCCcGGCc -3'
miRNA:   3'- uCUACCa---CCgCGGGCCG---UUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 97701 0.67 0.736551
Target:  5'- gGGgcGGUGGgGagaCGGCGggugGCCCGGGCg -3'
miRNA:   3'- -UCuaCCACCgCgg-GCCGU----UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 119590 0.67 0.736551
Target:  5'- gAGAccGUGGcCGCCCcGUAugCCGAGCc -3'
miRNA:   3'- -UCUacCACC-GCGGGcCGUugGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 32513 0.67 0.736551
Target:  5'- cGGggGGUccgcgccGCGCCCGGCcccGGCCCcGGCc -3'
miRNA:   3'- -UCuaCCAc------CGCGGGCCG---UUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 34726 0.67 0.736551
Target:  5'- ---cGGUcGGCGCCCccuGGCGGCCgCGGGg -3'
miRNA:   3'- ucuaCCA-CCGCGGG---CCGUUGG-GUUUg -5'
23783 5' -57.5 NC_005261.1 + 44026 0.67 0.746337
Target:  5'- cGGcgGGcGGcCGCCgcgCGGCGGCCgCGGGCg -3'
miRNA:   3'- -UCuaCCaCC-GCGG---GCCGUUGG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 60327 0.67 0.750223
Target:  5'- cAGGUGGacgacgguguuugcGGCGCCgCGGCcgcGCgCCAGGCa -3'
miRNA:   3'- -UCUACCa-------------CCGCGG-GCCGu--UG-GGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 55190 0.67 0.756021
Target:  5'- cGGAUcGGcgcacGGCGUagcgcggauCCGGCGGCCCGAGg -3'
miRNA:   3'- -UCUA-CCa----CCGCG---------GGCCGUUGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 104095 0.66 0.784373
Target:  5'- aGGgcGGcGGCGCuCCGcGCGACCgCAGccGCg -3'
miRNA:   3'- -UCuaCCaCCGCG-GGC-CGUUGG-GUU--UG- -5'
23783 5' -57.5 NC_005261.1 + 4932 0.66 0.784373
Target:  5'- ---cGGccgcGaGCGCCCGcgccGCGGCCCAGGCg -3'
miRNA:   3'- ucuaCCa---C-CGCGGGC----CGUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 127313 0.66 0.784373
Target:  5'- uGgcGGUGGgGCCCuGCcGCCCGc-- -3'
miRNA:   3'- uCuaCCACCgCGGGcCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 28716 0.66 0.784373
Target:  5'- ---cGG-GGgGCCCGGgGGCCUcgGCg -3'
miRNA:   3'- ucuaCCaCCgCGGGCCgUUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 2809 0.66 0.784373
Target:  5'- ---gGGaGGgGCCgGGCGGCCCcAGCc -3'
miRNA:   3'- ucuaCCaCCgCGGgCCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 124206 0.66 0.78159
Target:  5'- ---cGGUGGCGUgaacugcguggcugCCaGCAGCCCAAc- -3'
miRNA:   3'- ucuaCCACCGCG--------------GGcCGUUGGGUUug -5'
23783 5' -57.5 NC_005261.1 + 38239 0.66 0.828743
Target:  5'- cGGAgcGG-GGCGCCgGGCucgcacgccAGCCUggGCu -3'
miRNA:   3'- -UCUa-CCaCCGCGGgCCG---------UUGGGuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.