miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 134952 0.77 0.237135
Target:  5'- cGAUGGgcgagGGCG-CCGGCGACgCAGACg -3'
miRNA:   3'- uCUACCa----CCGCgGGCCGUUGgGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 85397 0.75 0.322555
Target:  5'- --cUGGUaGGCGCCCGcG-AGCCCGAGCa -3'
miRNA:   3'- ucuACCA-CCGCGGGC-CgUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 78050 0.75 0.337571
Target:  5'- cGGUGGUcGcGgGCCCGGCccccgcgccGGCCCAGGCg -3'
miRNA:   3'- uCUACCA-C-CgCGGGCCG---------UUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 71403 0.74 0.377297
Target:  5'- -cGUGGUaggcGGCGUCCGGCGcggggcccgGCCCGGGCc -3'
miRNA:   3'- ucUACCA----CCGCGGGCCGU---------UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 34933 0.74 0.385612
Target:  5'- cGcgGGgGGCGgCCGGCGcgACCCGGGCc -3'
miRNA:   3'- uCuaCCaCCGCgGGCCGU--UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 4120 0.73 0.402599
Target:  5'- cGAgcuGUGGC-CCCGGCAGCCCu-GCa -3'
miRNA:   3'- uCUac-CACCGcGGGCCGUUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 105274 0.73 0.402599
Target:  5'- cGGcgGGcGGCaGCgCCGGCgAGCCCGGGCg -3'
miRNA:   3'- -UCuaCCaCCG-CG-GGCCG-UUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 43299 0.72 0.456291
Target:  5'- cGcgGGgGGCG-CCGGCAGCCCGGc- -3'
miRNA:   3'- uCuaCCaCCGCgGGCCGUUGGGUUug -5'
23783 5' -57.5 NC_005261.1 + 14535 0.72 0.456291
Target:  5'- cGGUGGcgcGGcCGCCCGGCGACCa---- -3'
miRNA:   3'- uCUACCa--CC-GCGGGCCGUUGGguuug -5'
23783 5' -57.5 NC_005261.1 + 74456 0.72 0.456291
Target:  5'- gGGGUGGgGGCGCCgcccccggcgCGGCGuGCCUggGCg -3'
miRNA:   3'- -UCUACCaCCGCGG----------GCCGU-UGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 60390 0.72 0.456291
Target:  5'- gAGGUGcGccuccaUGGCGCCgGGcCGGCCCGGGCc -3'
miRNA:   3'- -UCUAC-C------ACCGCGGgCC-GUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 39379 0.72 0.465612
Target:  5'- cGGccGGggagGGCgGCCCuggcGGCGACCCGAGCc -3'
miRNA:   3'- -UCuaCCa---CCG-CGGG----CCGUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 75843 0.72 0.465612
Target:  5'- gGGAgGGgcgcgcGGCGCCgaCGGCGGCCCcGACg -3'
miRNA:   3'- -UCUaCCa-----CCGCGG--GCCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 122141 0.72 0.47503
Target:  5'- cAGGUGGUGGUGCaCGGcCGACgCCAGc- -3'
miRNA:   3'- -UCUACCACCGCGgGCC-GUUG-GGUUug -5'
23783 5' -57.5 NC_005261.1 + 27251 0.71 0.509686
Target:  5'- gGGGUGGggcggggugugcgGGCaGCCCGGCcggccCCCGGACc -3'
miRNA:   3'- -UCUACCa------------CCG-CGGGCCGuu---GGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 58311 0.71 0.513604
Target:  5'- gGGAgGG-GGCgGCCCaGCcGCCCGAGCa -3'
miRNA:   3'- -UCUaCCaCCG-CGGGcCGuUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 71217 0.71 0.533369
Target:  5'- cGAUGGUGcGCGCgCGcacGCGGCCCucGGCg -3'
miRNA:   3'- uCUACCAC-CGCGgGC---CGUUGGGu-UUG- -5'
23783 5' -57.5 NC_005261.1 + 83750 0.71 0.533369
Target:  5'- gAGGUGGcgGcGCGCCaCGGCcgggucgcagcGCCCGAGCa -3'
miRNA:   3'- -UCUACCa-C-CGCGG-GCCGu----------UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 132621 0.71 0.542352
Target:  5'- cAGggGGcgcUGGCGCCgaggacgcgggcgCGGCGGCCCuAGCg -3'
miRNA:   3'- -UCuaCC---ACCGCGG-------------GCCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 36835 0.7 0.553399
Target:  5'- cGGUGccGGCGCCCGGgggcUAGCCCGcGCu -3'
miRNA:   3'- uCUACcaCCGCGGGCC----GUUGGGUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.