Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23783 | 5' | -57.5 | NC_005261.1 | + | 50648 | 0.7 | 0.583836 |
Target: 5'- ---gGGUGGCG-CCGGCGaacgcgcucGCCCAAGu -3' miRNA: 3'- ucuaCCACCGCgGGCCGU---------UGGGUUUg -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 2982 | 0.7 | 0.583836 |
Target: 5'- gAGGcUGG-GGCucgGCCUGGCGGCCCGGc- -3' miRNA: 3'- -UCU-ACCaCCG---CGGGCCGUUGGGUUug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 92012 | 0.7 | 0.604315 |
Target: 5'- cAGGUGGaUGGCcuuGCCCGGgAACaCCAcguACa -3' miRNA: 3'- -UCUACC-ACCG---CGGGCCgUUG-GGUu--UG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 39838 | 0.69 | 0.612533 |
Target: 5'- uGAUGGUGacguggauguccCGCCgGGCG-CCCAGGCa -3' miRNA: 3'- uCUACCACc-----------GCGGgCCGUuGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 121779 | 0.69 | 0.614589 |
Target: 5'- gGGGUGGccGCGgCCGGCGGgCUggGCa -3' miRNA: 3'- -UCUACCacCGCgGGCCGUUgGGuuUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 97027 | 0.69 | 0.63517 |
Target: 5'- ---cGG-GcGCGCCCGGCcGCCCAc-- -3' miRNA: 3'- ucuaCCaC-CGCGGGCCGuUGGGUuug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 95036 | 0.69 | 0.63517 |
Target: 5'- ---cGGcGGCGCUCGGC-GCCgCAGACc -3' miRNA: 3'- ucuaCCaCCGCGGGCCGuUGG-GUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 123114 | 0.69 | 0.63517 |
Target: 5'- gGGAaaGUGGCGCuuGGCA-UUCAAGCg -3' miRNA: 3'- -UCUacCACCGCGggCCGUuGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 5576 | 0.69 | 0.63517 |
Target: 5'- gAGAUGGgGGCGCCgagGGC-GCCCGc-- -3' miRNA: 3'- -UCUACCaCCGCGGg--CCGuUGGGUuug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 123283 | 0.69 | 0.644432 |
Target: 5'- cGGGUGGUccgccaGCGCCuccgcgauguccaCGaGCGGCCCAAGCa -3' miRNA: 3'- -UCUACCAc-----CGCGG-------------GC-CGUUGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 34410 | 0.69 | 0.645461 |
Target: 5'- cGAccgGGUGGCGCgCGGCccgcgccuGCCCcuGCu -3' miRNA: 3'- uCUa--CCACCGCGgGCCGu-------UGGGuuUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 90397 | 0.69 | 0.645461 |
Target: 5'- cGGcgGGgcUGGCGCCCGGCGcggACUacgcGACg -3' miRNA: 3'- -UCuaCC--ACCGCGGGCCGU---UGGgu--UUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 91150 | 0.69 | 0.645461 |
Target: 5'- ----cGUGcCGCCCGGCGagugGCCCGGGCg -3' miRNA: 3'- ucuacCACcGCGGGCCGU----UGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 94852 | 0.69 | 0.655741 |
Target: 5'- --cUGGccucGGCGCUCGcGCAcgGCCCGGGCg -3' miRNA: 3'- ucuACCa---CCGCGGGC-CGU--UGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 65396 | 0.69 | 0.655741 |
Target: 5'- cGGcgGGUugGGCGgcCCCGGCAGCuCCAc-- -3' miRNA: 3'- -UCuaCCA--CCGC--GGGCCGUUG-GGUuug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 22650 | 0.69 | 0.666003 |
Target: 5'- uAGAcgcgcUGGcGGCGCCUgGGCGgcGCCCGAGu -3' miRNA: 3'- -UCU-----ACCaCCGCGGG-CCGU--UGGGUUUg -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 76593 | 0.69 | 0.666003 |
Target: 5'- gAGcgGGUGGCGCgCGcGCugccGCCCGc-- -3' miRNA: 3'- -UCuaCCACCGCGgGC-CGu---UGGGUuug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 94292 | 0.69 | 0.666003 |
Target: 5'- cAGAgcaUGGCGUagUCGGCGACCCAGGg -3' miRNA: 3'- -UCUaccACCGCG--GGCCGUUGGGUUUg -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 45567 | 0.68 | 0.676236 |
Target: 5'- --cUGcUGGCGgCCGGCAACCCc--- -3' miRNA: 3'- ucuACcACCGCgGGCCGUUGGGuuug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 64494 | 0.68 | 0.676236 |
Target: 5'- cGGGUGGcgcgGGUGCUCGG-GGCCCGcgGGCg -3' miRNA: 3'- -UCUACCa---CCGCGGGCCgUUGGGU--UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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