miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 35866 0.68 0.676236
Target:  5'- uGGA-GGUGGcCGCCUGGguGCgaGAACg -3'
miRNA:   3'- -UCUaCCACC-GCGGGCCguUGggUUUG- -5'
23783 5' -57.5 NC_005261.1 + 75806 0.68 0.685415
Target:  5'- cAGAUcGGcacgcUGGUGCCCGGCGcggccgcGCCCg--- -3'
miRNA:   3'- -UCUA-CC-----ACCGCGGGCCGU-------UGGGuuug -5'
23783 5' -57.5 NC_005261.1 + 32324 0.68 0.686433
Target:  5'- ---cGGccgcGGCGCCCGGCGugGCCUggGa -3'
miRNA:   3'- ucuaCCa---CCGCGGGCCGU--UGGGuuUg -5'
23783 5' -57.5 NC_005261.1 + 15369 0.68 0.696584
Target:  5'- ---cGGcGGCGCUCGGC-GCCCucGGCg -3'
miRNA:   3'- ucuaCCaCCGCGGGCCGuUGGGu-UUG- -5'
23783 5' -57.5 NC_005261.1 + 30711 0.68 0.696584
Target:  5'- cGcgGGagccccGGCGCCgGGCcgccaGGCCCGAGCc -3'
miRNA:   3'- uCuaCCa-----CCGCGGgCCG-----UUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 97764 0.68 0.706681
Target:  5'- ---cGGcGGCGCggCCGGCAucgacuCCCGAGCc -3'
miRNA:   3'- ucuaCCaCCGCG--GGCCGUu-----GGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 85278 0.68 0.706681
Target:  5'- uGggGGUuaGGCGUCgGGCu-CCCGGGCg -3'
miRNA:   3'- uCuaCCA--CCGCGGgCCGuuGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 52975 0.68 0.706681
Target:  5'- ---cGGUgcGGCG-CCGGCAggcgggggcggcGCCCAGGCg -3'
miRNA:   3'- ucuaCCA--CCGCgGGCCGU------------UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 23001 0.68 0.716714
Target:  5'- aAGA-GG-GGgGCCCggaGGCGGCCCGcgAACg -3'
miRNA:   3'- -UCUaCCaCCgCGGG---CCGUUGGGU--UUG- -5'
23783 5' -57.5 NC_005261.1 + 89274 0.68 0.716714
Target:  5'- cGAcgGGcUGGCGuuCCCGGCGGCCgCcAACg -3'
miRNA:   3'- uCUa-CC-ACCGC--GGGCCGUUGG-GuUUG- -5'
23783 5' -57.5 NC_005261.1 + 31246 0.68 0.716714
Target:  5'- cGAgcccUGGCGCCCGGCGcucgccuucgACCCcgAGGCg -3'
miRNA:   3'- uCUacc-ACCGCGGGCCGU----------UGGG--UUUG- -5'
23783 5' -57.5 NC_005261.1 + 3349 0.68 0.723694
Target:  5'- ------cGGCGCCCGGCGcgccggccuucaggGCCgCGAGCg -3'
miRNA:   3'- ucuaccaCCGCGGGCCGU--------------UGG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 71076 0.68 0.726674
Target:  5'- cGGcgGGcggGGCGUCCGG--GCCCGAGa -3'
miRNA:   3'- -UCuaCCa--CCGCGGGCCguUGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 43802 0.68 0.726674
Target:  5'- cGGGUGaGggGGCGCCgGGCGcGCCCu--- -3'
miRNA:   3'- -UCUAC-Ca-CCGCGGgCCGU-UGGGuuug -5'
23783 5' -57.5 NC_005261.1 + 113912 0.68 0.726674
Target:  5'- cGAUGGccgaGGCagcggGCgCGGCGACCCucGCa -3'
miRNA:   3'- uCUACCa---CCG-----CGgGCCGUUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 35703 0.67 0.736551
Target:  5'- cGGUGGgccgGGgGCUCGGUggcGGCCCcGGCc -3'
miRNA:   3'- uCUACCa---CCgCGGGCCG---UUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 97701 0.67 0.736551
Target:  5'- gGGgcGGUGGgGagaCGGCGggugGCCCGGGCg -3'
miRNA:   3'- -UCuaCCACCgCgg-GCCGU----UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 119590 0.67 0.736551
Target:  5'- gAGAccGUGGcCGCCCcGUAugCCGAGCc -3'
miRNA:   3'- -UCUacCACC-GCGGGcCGUugGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 32513 0.67 0.736551
Target:  5'- cGGggGGUccgcgccGCGCCCGGCcccGGCCCcGGCc -3'
miRNA:   3'- -UCuaCCAc------CGCGGGCCG---UUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 34726 0.67 0.736551
Target:  5'- ---cGGUcGGCGCCCccuGGCGGCCgCGGGg -3'
miRNA:   3'- ucuaCCA-CCGCGGG---CCGUUGG-GUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.