miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 44026 0.67 0.746337
Target:  5'- cGGcgGGcGGcCGCCgcgCGGCGGCCgCGGGCg -3'
miRNA:   3'- -UCuaCCaCC-GCGG---GCCGUUGG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 60327 0.67 0.750223
Target:  5'- cAGGUGGacgacgguguuugcGGCGCCgCGGCcgcGCgCCAGGCa -3'
miRNA:   3'- -UCUACCa-------------CCGCGG-GCCGu--UG-GGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 55190 0.67 0.756021
Target:  5'- cGGAUcGGcgcacGGCGUagcgcggauCCGGCGGCCCGAGg -3'
miRNA:   3'- -UCUA-CCa----CCGCG---------GGCCGUUGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 87596 0.67 0.756021
Target:  5'- cGGUGGUcuuGGUG-CCGGCGACCaccGCg -3'
miRNA:   3'- uCUACCA---CCGCgGGCCGUUGGguuUG- -5'
23783 5' -57.5 NC_005261.1 + 100277 0.67 0.756021
Target:  5'- ---cGGUGGCGCacgaagCGGCAGaaggcCCCAAAg -3'
miRNA:   3'- ucuaCCACCGCGg-----GCCGUU-----GGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 107799 0.67 0.756021
Target:  5'- aGGA-GGgccucGCGCgCGGCGGCCCuAGCg -3'
miRNA:   3'- -UCUaCCac---CGCGgGCCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 106123 0.67 0.765595
Target:  5'- ---cGGcgcGcGCGCgCCGGCAACgCCGGACa -3'
miRNA:   3'- ucuaCCa--C-CGCG-GGCCGUUG-GGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 70982 0.67 0.765595
Target:  5'- aAGAgcgcGUGGCGCgCgGGCGGCcgCCAGGCc -3'
miRNA:   3'- -UCUac--CACCGCG-GgCCGUUG--GGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 84270 0.67 0.765595
Target:  5'- cGGcAUGGcgcaGGUGCcgCCGGCGGCCCcGGCc -3'
miRNA:   3'- -UC-UACCa---CCGCG--GGCCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 125418 0.67 0.775049
Target:  5'- cGcgGGcGGCGCUCaGGCcGCCCAu-- -3'
miRNA:   3'- uCuaCCaCCGCGGG-CCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 72446 0.67 0.775049
Target:  5'- cGGcgGG-GGCGCCCgcggcgagcgcGGCGAgCgCGAGCg -3'
miRNA:   3'- -UCuaCCaCCGCGGG-----------CCGUUgG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 18533 0.67 0.775049
Target:  5'- uGAcGGcGGCGUCCcGCGGCCCGcugGGCa -3'
miRNA:   3'- uCUaCCaCCGCGGGcCGUUGGGU---UUG- -5'
23783 5' -57.5 NC_005261.1 + 134143 0.67 0.775049
Target:  5'- --cUGGgcuGCGCCUGGCGccACCCGGGg -3'
miRNA:   3'- ucuACCac-CGCGGGCCGU--UGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 52727 0.66 0.78159
Target:  5'- gAGAUGc-GGCGCCgCGGCGcgaucggggaagugGCCCGcgagGACg -3'
miRNA:   3'- -UCUACcaCCGCGG-GCCGU--------------UGGGU----UUG- -5'
23783 5' -57.5 NC_005261.1 + 124206 0.66 0.78159
Target:  5'- ---cGGUGGCGUgaacugcguggcugCCaGCAGCCCAAc- -3'
miRNA:   3'- ucuaCCACCGCG--------------GGcCGUUGGGUUug -5'
23783 5' -57.5 NC_005261.1 + 104095 0.66 0.784373
Target:  5'- aGGgcGGcGGCGCuCCGcGCGACCgCAGccGCg -3'
miRNA:   3'- -UCuaCCaCCGCG-GGC-CGUUGG-GUU--UG- -5'
23783 5' -57.5 NC_005261.1 + 4932 0.66 0.784373
Target:  5'- ---cGGccgcGaGCGCCCGcgccGCGGCCCAGGCg -3'
miRNA:   3'- ucuaCCa---C-CGCGGGC----CGUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 127313 0.66 0.784373
Target:  5'- uGgcGGUGGgGCCCuGCcGCCCGc-- -3'
miRNA:   3'- uCuaCCACCgCGGGcCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 28716 0.66 0.784373
Target:  5'- ---cGG-GGgGCCCGGgGGCCUcgGCg -3'
miRNA:   3'- ucuaCCaCCgCGGGCCgUUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 118854 0.66 0.784373
Target:  5'- cGGAgGGcGGCGCgCCcGCGGCCCuGGCc -3'
miRNA:   3'- -UCUaCCaCCGCG-GGcCGUUGGGuUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.