miRNA display CGI


Results 21 - 40 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 132906 0.66 0.802598
Target:  5'- cGcgGGcGGCGCCgagCGGCGGCUCcuGCc -3'
miRNA:   3'- uCuaCCaCCGCGG---GCCGUUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 65807 0.66 0.8017
Target:  5'- cGGGUcGG-GGUGCCCGgGCGgcggcgcgaagcuGCCCGAGu -3'
miRNA:   3'- -UCUA-CCaCCGCGGGC-CGU-------------UGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 68964 0.66 0.793559
Target:  5'- gGGAccUGGUGcGCGCCaCcGCGGCCCu--- -3'
miRNA:   3'- -UCU--ACCAC-CGCGG-GcCGUUGGGuuug -5'
23783 5' -57.5 NC_005261.1 + 61569 0.66 0.792647
Target:  5'- uGAUGGUGGCGCuggugauggCCguguucgugGGCAgccucccGCCCAccGACa -3'
miRNA:   3'- uCUACCACCGCG---------GG---------CCGU-------UGGGU--UUG- -5'
23783 5' -57.5 NC_005261.1 + 86654 0.66 0.792647
Target:  5'- gAGuUGGagcugaacaccaUGGCGCCCaccagcccggcgaGGCGGCCCAcguACg -3'
miRNA:   3'- -UCuACC------------ACCGCGGG-------------CCGUUGGGUu--UG- -5'
23783 5' -57.5 NC_005261.1 + 51516 0.66 0.792647
Target:  5'- cAGAUGcugGGCGCCgGGCuggggcugucgcuAGCgCAGACa -3'
miRNA:   3'- -UCUACca-CCGCGGgCCG-------------UUGgGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 2809 0.66 0.784373
Target:  5'- ---gGGaGGgGCCgGGCGGCCCcAGCc -3'
miRNA:   3'- ucuaCCaCCgCGGgCCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 28716 0.66 0.784373
Target:  5'- ---cGG-GGgGCCCGGgGGCCUcgGCg -3'
miRNA:   3'- ucuaCCaCCgCGGGCCgUUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 127313 0.66 0.784373
Target:  5'- uGgcGGUGGgGCCCuGCcGCCCGc-- -3'
miRNA:   3'- uCuaCCACCgCGGGcCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 4932 0.66 0.784373
Target:  5'- ---cGGccgcGaGCGCCCGcgccGCGGCCCAGGCg -3'
miRNA:   3'- ucuaCCa---C-CGCGGGC----CGUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 104095 0.66 0.784373
Target:  5'- aGGgcGGcGGCGCuCCGcGCGACCgCAGccGCg -3'
miRNA:   3'- -UCuaCCaCCGCG-GGC-CGUUGG-GUU--UG- -5'
23783 5' -57.5 NC_005261.1 + 118854 0.66 0.784373
Target:  5'- cGGAgGGcGGCGCgCCcGCGGCCCuGGCc -3'
miRNA:   3'- -UCUaCCaCCGCG-GGcCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 124206 0.66 0.78159
Target:  5'- ---cGGUGGCGUgaacugcguggcugCCaGCAGCCCAAc- -3'
miRNA:   3'- ucuaCCACCGCG--------------GGcCGUUGGGUUug -5'
23783 5' -57.5 NC_005261.1 + 52727 0.66 0.78159
Target:  5'- gAGAUGc-GGCGCCgCGGCGcgaucggggaagugGCCCGcgagGACg -3'
miRNA:   3'- -UCUACcaCCGCGG-GCCGU--------------UGGGU----UUG- -5'
23783 5' -57.5 NC_005261.1 + 125418 0.67 0.775049
Target:  5'- cGcgGGcGGCGCUCaGGCcGCCCAu-- -3'
miRNA:   3'- uCuaCCaCCGCGGG-CCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 72446 0.67 0.775049
Target:  5'- cGGcgGG-GGCGCCCgcggcgagcgcGGCGAgCgCGAGCg -3'
miRNA:   3'- -UCuaCCaCCGCGGG-----------CCGUUgG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 134143 0.67 0.775049
Target:  5'- --cUGGgcuGCGCCUGGCGccACCCGGGg -3'
miRNA:   3'- ucuACCac-CGCGGGCCGU--UGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 18533 0.67 0.775049
Target:  5'- uGAcGGcGGCGUCCcGCGGCCCGcugGGCa -3'
miRNA:   3'- uCUaCCaCCGCGGGcCGUUGGGU---UUG- -5'
23783 5' -57.5 NC_005261.1 + 106123 0.67 0.765595
Target:  5'- ---cGGcgcGcGCGCgCCGGCAACgCCGGACa -3'
miRNA:   3'- ucuaCCa--C-CGCG-GGCCGUUG-GGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 70982 0.67 0.765595
Target:  5'- aAGAgcgcGUGGCGCgCgGGCGGCcgCCAGGCc -3'
miRNA:   3'- -UCUac--CACCGCG-GgCCGUUG--GGUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.