miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 2809 0.66 0.784373
Target:  5'- ---gGGaGGgGCCgGGCGGCCCcAGCc -3'
miRNA:   3'- ucuaCCaCCgCGGgCCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 2982 0.7 0.583836
Target:  5'- gAGGcUGG-GGCucgGCCUGGCGGCCCGGc- -3'
miRNA:   3'- -UCU-ACCaCCG---CGGGCCGUUGGGUUug -5'
23783 5' -57.5 NC_005261.1 + 3349 0.68 0.723694
Target:  5'- ------cGGCGCCCGGCGcgccggccuucaggGCCgCGAGCg -3'
miRNA:   3'- ucuaccaCCGCGGGCCGU--------------UGG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 4120 0.73 0.402599
Target:  5'- cGAgcuGUGGC-CCCGGCAGCCCu-GCa -3'
miRNA:   3'- uCUac-CACCGcGGGCCGUUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 4932 0.66 0.784373
Target:  5'- ---cGGccgcGaGCGCCCGcgccGCGGCCCAGGCg -3'
miRNA:   3'- ucuaCCa---C-CGCGGGC----CGUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 5576 0.69 0.63517
Target:  5'- gAGAUGGgGGCGCCgagGGC-GCCCGc-- -3'
miRNA:   3'- -UCUACCaCCGCGGg--CCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 12128 0.66 0.807947
Target:  5'- aGGAUGGcgcccgccgccgcGGCGgCCGcGCAGgcCCCAAGCc -3'
miRNA:   3'- -UCUACCa------------CCGCgGGC-CGUU--GGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 14535 0.72 0.456291
Target:  5'- cGGUGGcgcGGcCGCCCGGCGACCa---- -3'
miRNA:   3'- uCUACCa--CC-GCGGGCCGUUGGguuug -5'
23783 5' -57.5 NC_005261.1 + 15369 0.68 0.696584
Target:  5'- ---cGGcGGCGCUCGGC-GCCCucGGCg -3'
miRNA:   3'- ucuaCCaCCGCGGGCCGuUGGGu-UUG- -5'
23783 5' -57.5 NC_005261.1 + 18533 0.67 0.775049
Target:  5'- uGAcGGcGGCGUCCcGCGGCCCGcugGGCa -3'
miRNA:   3'- uCUaCCaCCGCGGGcCGUUGGGU---UUG- -5'
23783 5' -57.5 NC_005261.1 + 22650 0.69 0.666003
Target:  5'- uAGAcgcgcUGGcGGCGCCUgGGCGgcGCCCGAGu -3'
miRNA:   3'- -UCU-----ACCaCCGCGGG-CCGU--UGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 23001 0.68 0.716714
Target:  5'- aAGA-GG-GGgGCCCggaGGCGGCCCGcgAACg -3'
miRNA:   3'- -UCUaCCaCCgCGGG---CCGUUGGGU--UUG- -5'
23783 5' -57.5 NC_005261.1 + 27251 0.71 0.509686
Target:  5'- gGGGUGGggcggggugugcgGGCaGCCCGGCcggccCCCGGACc -3'
miRNA:   3'- -UCUACCa------------CCG-CGGGCCGuu---GGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 28716 0.66 0.784373
Target:  5'- ---cGG-GGgGCCCGGgGGCCUcgGCg -3'
miRNA:   3'- ucuaCCaCCgCGGGCCgUUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 29798 0.66 0.81148
Target:  5'- cGGA-GGccGGCG-CCGGCGGCgCGGGCg -3'
miRNA:   3'- -UCUaCCa-CCGCgGGCCGUUGgGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 30711 0.68 0.696584
Target:  5'- cGcgGGagccccGGCGCCgGGCcgccaGGCCCGAGCc -3'
miRNA:   3'- uCuaCCa-----CCGCGGgCCG-----UUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 30903 0.66 0.820198
Target:  5'- cGGGcUGG-GGcCGCCCGGCcccuCCCGGc- -3'
miRNA:   3'- -UCU-ACCaCC-GCGGGCCGuu--GGGUUug -5'
23783 5' -57.5 NC_005261.1 + 31246 0.68 0.716714
Target:  5'- cGAgcccUGGCGCCCGGCGcucgccuucgACCCcgAGGCg -3'
miRNA:   3'- uCUacc-ACCGCGGGCCGU----------UGGG--UUUG- -5'
23783 5' -57.5 NC_005261.1 + 31402 0.66 0.820198
Target:  5'- -cGUGGUGGUGCUCuaCGACCCGc-- -3'
miRNA:   3'- ucUACCACCGCGGGccGUUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 32324 0.68 0.686433
Target:  5'- ---cGGccgcGGCGCCCGGCGugGCCUggGa -3'
miRNA:   3'- ucuaCCa---CCGCGGGCCGU--UGGGuuUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.