miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 58311 0.71 0.513604
Target:  5'- gGGAgGG-GGCgGCCCaGCcGCCCGAGCa -3'
miRNA:   3'- -UCUaCCaCCG-CGGGcCGuUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 58999 0.66 0.820198
Target:  5'- cGgcGGUG-CGCCgGGCucGCCCAGcgGCg -3'
miRNA:   3'- uCuaCCACcGCGGgCCGu-UGGGUU--UG- -5'
23783 5' -57.5 NC_005261.1 + 60327 0.67 0.750223
Target:  5'- cAGGUGGacgacgguguuugcGGCGCCgCGGCcgcGCgCCAGGCa -3'
miRNA:   3'- -UCUACCa-------------CCGCGG-GCCGu--UG-GGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 60390 0.72 0.456291
Target:  5'- gAGGUGcGccuccaUGGCGCCgGGcCGGCCCGGGCc -3'
miRNA:   3'- -UCUAC-C------ACCGCGGgCC-GUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 61569 0.66 0.792647
Target:  5'- uGAUGGUGGCGCuggugauggCCguguucgugGGCAgccucccGCCCAccGACa -3'
miRNA:   3'- uCUACCACCGCG---------GG---------CCGU-------UGGGU--UUG- -5'
23783 5' -57.5 NC_005261.1 + 64494 0.68 0.676236
Target:  5'- cGGGUGGcgcgGGUGCUCGG-GGCCCGcgGGCg -3'
miRNA:   3'- -UCUACCa---CCGCGGGCCgUUGGGU--UUG- -5'
23783 5' -57.5 NC_005261.1 + 65396 0.69 0.655741
Target:  5'- cGGcgGGUugGGCGgcCCCGGCAGCuCCAc-- -3'
miRNA:   3'- -UCuaCCA--CCGC--GGGCCGUUG-GGUuug -5'
23783 5' -57.5 NC_005261.1 + 65807 0.66 0.8017
Target:  5'- cGGGUcGG-GGUGCCCGgGCGgcggcgcgaagcuGCCCGAGu -3'
miRNA:   3'- -UCUA-CCaCCGCGGGC-CGU-------------UGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 67110 0.66 0.81148
Target:  5'- uGcgGGcGGCGCgcgcagugCGGCGGCCCGAccGCg -3'
miRNA:   3'- uCuaCCaCCGCGg-------GCCGUUGGGUU--UG- -5'
23783 5' -57.5 NC_005261.1 + 68964 0.66 0.793559
Target:  5'- gGGAccUGGUGcGCGCCaCcGCGGCCCu--- -3'
miRNA:   3'- -UCU--ACCAC-CGCGG-GcCGUUGGGuuug -5'
23783 5' -57.5 NC_005261.1 + 70982 0.67 0.765595
Target:  5'- aAGAgcgcGUGGCGCgCgGGCGGCcgCCAGGCc -3'
miRNA:   3'- -UCUac--CACCGCG-GgCCGUUG--GGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 71076 0.68 0.726674
Target:  5'- cGGcgGGcggGGCGUCCGG--GCCCGAGa -3'
miRNA:   3'- -UCuaCCa--CCGCGGGCCguUGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 71217 0.71 0.533369
Target:  5'- cGAUGGUGcGCGCgCGcacGCGGCCCucGGCg -3'
miRNA:   3'- uCUACCAC-CGCGgGC---CGUUGGGu-UUG- -5'
23783 5' -57.5 NC_005261.1 + 71403 0.74 0.377297
Target:  5'- -cGUGGUaggcGGCGUCCGGCGcggggcccgGCCCGGGCc -3'
miRNA:   3'- ucUACCA----CCGCGGGCCGU---------UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 72446 0.67 0.775049
Target:  5'- cGGcgGG-GGCGCCCgcggcgagcgcGGCGAgCgCGAGCg -3'
miRNA:   3'- -UCuaCCaCCGCGGG-----------CCGUUgG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 74456 0.72 0.456291
Target:  5'- gGGGUGGgGGCGCCgcccccggcgCGGCGuGCCUggGCg -3'
miRNA:   3'- -UCUACCaCCGCGG----------GCCGU-UGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 75806 0.68 0.685415
Target:  5'- cAGAUcGGcacgcUGGUGCCCGGCGcggccgcGCCCg--- -3'
miRNA:   3'- -UCUA-CC-----ACCGCGGGCCGU-------UGGGuuug -5'
23783 5' -57.5 NC_005261.1 + 75843 0.72 0.465612
Target:  5'- gGGAgGGgcgcgcGGCGCCgaCGGCGGCCCcGACg -3'
miRNA:   3'- -UCUaCCa-----CCGCGG--GCCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 76593 0.69 0.666003
Target:  5'- gAGcgGGUGGCGCgCGcGCugccGCCCGc-- -3'
miRNA:   3'- -UCuaCCACCGCGgGC-CGu---UGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 78050 0.75 0.337571
Target:  5'- cGGUGGUcGcGgGCCCGGCccccgcgccGGCCCAGGCg -3'
miRNA:   3'- uCUACCA-C-CgCGGGCCG---------UUGGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.