Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23783 | 5' | -57.5 | NC_005261.1 | + | 83750 | 0.71 | 0.533369 |
Target: 5'- gAGGUGGcgGcGCGCCaCGGCcgggucgcagcGCCCGAGCa -3' miRNA: 3'- -UCUACCa-C-CGCGG-GCCGu----------UGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 84270 | 0.67 | 0.765595 |
Target: 5'- cGGcAUGGcgcaGGUGCcgCCGGCGGCCCcGGCc -3' miRNA: 3'- -UC-UACCa---CCGCG--GGCCGUUGGGuUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 85278 | 0.68 | 0.706681 |
Target: 5'- uGggGGUuaGGCGUCgGGCu-CCCGGGCg -3' miRNA: 3'- uCuaCCA--CCGCGGgCCGuuGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 85397 | 0.75 | 0.322555 |
Target: 5'- --cUGGUaGGCGCCCGcG-AGCCCGAGCa -3' miRNA: 3'- ucuACCA-CCGCGGGC-CgUUGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 86654 | 0.66 | 0.792647 |
Target: 5'- gAGuUGGagcugaacaccaUGGCGCCCaccagcccggcgaGGCGGCCCAcguACg -3' miRNA: 3'- -UCuACC------------ACCGCGGG-------------CCGUUGGGUu--UG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 87596 | 0.67 | 0.756021 |
Target: 5'- cGGUGGUcuuGGUG-CCGGCGACCaccGCg -3' miRNA: 3'- uCUACCA---CCGCgGGCCGUUGGguuUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 88148 | 0.66 | 0.81148 |
Target: 5'- cGcgGG-GGCGcCCCGGCcgcgcagccgGGCCgGGGCg -3' miRNA: 3'- uCuaCCaCCGC-GGGCCG----------UUGGgUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 89274 | 0.68 | 0.716714 |
Target: 5'- cGAcgGGcUGGCGuuCCCGGCGGCCgCcAACg -3' miRNA: 3'- uCUa-CC-ACCGC--GGGCCGUUGG-GuUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 90397 | 0.69 | 0.645461 |
Target: 5'- cGGcgGGgcUGGCGCCCGGCGcggACUacgcGACg -3' miRNA: 3'- -UCuaCC--ACCGCGGGCCGU---UGGgu--UUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 91150 | 0.69 | 0.645461 |
Target: 5'- ----cGUGcCGCCCGGCGagugGCCCGGGCg -3' miRNA: 3'- ucuacCACcGCGGGCCGU----UGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 92012 | 0.7 | 0.604315 |
Target: 5'- cAGGUGGaUGGCcuuGCCCGGgAACaCCAcguACa -3' miRNA: 3'- -UCUACC-ACCG---CGGGCCgUUG-GGUu--UG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 92934 | 0.66 | 0.802598 |
Target: 5'- ---cGGcGGagcagcuGCCCGGCGuCCCGGACa -3' miRNA: 3'- ucuaCCaCCg------CGGGCCGUuGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 94292 | 0.69 | 0.666003 |
Target: 5'- cAGAgcaUGGCGUagUCGGCGACCCAGGg -3' miRNA: 3'- -UCUaccACCGCG--GGCCGUUGGGUUUg -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 94852 | 0.69 | 0.655741 |
Target: 5'- --cUGGccucGGCGCUCGcGCAcgGCCCGGGCg -3' miRNA: 3'- ucuACCa---CCGCGGGC-CGU--UGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 95036 | 0.69 | 0.63517 |
Target: 5'- ---cGGcGGCGCUCGGC-GCCgCAGACc -3' miRNA: 3'- ucuaCCaCCGCGGGCCGuUGG-GUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 97027 | 0.69 | 0.63517 |
Target: 5'- ---cGG-GcGCGCCCGGCcGCCCAc-- -3' miRNA: 3'- ucuaCCaC-CGCGGGCCGuUGGGUuug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 97497 | 0.66 | 0.828743 |
Target: 5'- --uUGGgGGCGCCgGGgCcGCCgGAACg -3' miRNA: 3'- ucuACCaCCGCGGgCC-GuUGGgUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 97701 | 0.67 | 0.736551 |
Target: 5'- gGGgcGGUGGgGagaCGGCGggugGCCCGGGCg -3' miRNA: 3'- -UCuaCCACCgCgg-GCCGU----UGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 97764 | 0.68 | 0.706681 |
Target: 5'- ---cGGcGGCGCggCCGGCAucgacuCCCGAGCc -3' miRNA: 3'- ucuaCCaCCGCG--GGCCGUu-----GGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 100277 | 0.67 | 0.756021 |
Target: 5'- ---cGGUGGCGCacgaagCGGCAGaaggcCCCAAAg -3' miRNA: 3'- ucuaCCACCGCGg-----GCCGUU-----GGGUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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