miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 100810 0.66 0.802598
Target:  5'- cGGAaGGgcgcGuGCGCCUGcGCcGCCCAGGCc -3'
miRNA:   3'- -UCUaCCa---C-CGCGGGC-CGuUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 104095 0.66 0.784373
Target:  5'- aGGgcGGcGGCGCuCCGcGCGACCgCAGccGCg -3'
miRNA:   3'- -UCuaCCaCCGCG-GGC-CGUUGG-GUU--UG- -5'
23783 5' -57.5 NC_005261.1 + 105274 0.73 0.402599
Target:  5'- cGGcgGGcGGCaGCgCCGGCgAGCCCGGGCg -3'
miRNA:   3'- -UCuaCCaCCG-CG-GGCCG-UUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 105960 0.66 0.827897
Target:  5'- cGAUGGccucGGCGCCCaGCGcggcgucgacgccGCCCGc-- -3'
miRNA:   3'- uCUACCa---CCGCGGGcCGU-------------UGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 106123 0.67 0.765595
Target:  5'- ---cGGcgcGcGCGCgCCGGCAACgCCGGACa -3'
miRNA:   3'- ucuaCCa--C-CGCG-GGCCGUUG-GGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 107799 0.67 0.756021
Target:  5'- aGGA-GGgccucGCGCgCGGCGGCCCuAGCg -3'
miRNA:   3'- -UCUaCCac---CGCGgGCCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 113579 0.66 0.810599
Target:  5'- cGGUGGccgccGCGCUgGGCGaccucgcGCCCGGGCa -3'
miRNA:   3'- uCUACCac---CGCGGgCCGU-------UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 113912 0.68 0.726674
Target:  5'- cGAUGGccgaGGCagcggGCgCGGCGACCCucGCa -3'
miRNA:   3'- uCUACCa---CCG-----CGgGCCGUUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 118854 0.66 0.784373
Target:  5'- cGGAgGGcGGCGCgCCcGCGGCCCuGGCc -3'
miRNA:   3'- -UCUaCCaCCGCG-GGcCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 118901 0.66 0.820198
Target:  5'- --cUGGUGGCcugcgucuggGUCCGGC-GCCgCGGGCg -3'
miRNA:   3'- ucuACCACCG----------CGGGCCGuUGG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 119590 0.67 0.736551
Target:  5'- gAGAccGUGGcCGCCCcGUAugCCGAGCc -3'
miRNA:   3'- -UCUacCACC-GCGGGcCGUugGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 121057 0.66 0.823637
Target:  5'- cGGUuGUGGCGCgcggugugcgcggcgCCGGCGGCCgCcAGCg -3'
miRNA:   3'- uCUAcCACCGCG---------------GGCCGUUGG-GuUUG- -5'
23783 5' -57.5 NC_005261.1 + 121779 0.69 0.614589
Target:  5'- gGGGUGGccGCGgCCGGCGGgCUggGCa -3'
miRNA:   3'- -UCUACCacCGCgGGCCGUUgGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 122141 0.72 0.47503
Target:  5'- cAGGUGGUGGUGCaCGGcCGACgCCAGc- -3'
miRNA:   3'- -UCUACCACCGCGgGCC-GUUG-GGUUug -5'
23783 5' -57.5 NC_005261.1 + 122334 0.66 0.827897
Target:  5'- ---aGGUGGCgcucgcagagcucGCCUGGCGGCCgCGGcucGCg -3'
miRNA:   3'- ucuaCCACCG-------------CGGGCCGUUGG-GUU---UG- -5'
23783 5' -57.5 NC_005261.1 + 123114 0.69 0.63517
Target:  5'- gGGAaaGUGGCGCuuGGCA-UUCAAGCg -3'
miRNA:   3'- -UCUacCACCGCGggCCGUuGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 123283 0.69 0.644432
Target:  5'- cGGGUGGUccgccaGCGCCuccgcgauguccaCGaGCGGCCCAAGCa -3'
miRNA:   3'- -UCUACCAc-----CGCGG-------------GC-CGUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 124206 0.66 0.78159
Target:  5'- ---cGGUGGCGUgaacugcguggcugCCaGCAGCCCAAc- -3'
miRNA:   3'- ucuaCCACCGCG--------------GGcCGUUGGGUUug -5'
23783 5' -57.5 NC_005261.1 + 125418 0.67 0.775049
Target:  5'- cGcgGGcGGCGCUCaGGCcGCCCAu-- -3'
miRNA:   3'- uCuaCCaCCGCGGG-CCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 127313 0.66 0.784373
Target:  5'- uGgcGGUGGgGCCCuGCcGCCCGc-- -3'
miRNA:   3'- uCuaCCACCgCGGGcCGuUGGGUuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.