miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 113579 0.66 0.810599
Target:  5'- cGGUGGccgccGCGCUgGGCGaccucgcGCCCGGGCa -3'
miRNA:   3'- uCUACCac---CGCGGgCCGU-------UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 107799 0.67 0.756021
Target:  5'- aGGA-GGgccucGCGCgCGGCGGCCCuAGCg -3'
miRNA:   3'- -UCUaCCac---CGCGgGCCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 106123 0.67 0.765595
Target:  5'- ---cGGcgcGcGCGCgCCGGCAACgCCGGACa -3'
miRNA:   3'- ucuaCCa--C-CGCG-GGCCGUUG-GGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 105960 0.66 0.827897
Target:  5'- cGAUGGccucGGCGCCCaGCGcggcgucgacgccGCCCGc-- -3'
miRNA:   3'- uCUACCa---CCGCGGGcCGU-------------UGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 105274 0.73 0.402599
Target:  5'- cGGcgGGcGGCaGCgCCGGCgAGCCCGGGCg -3'
miRNA:   3'- -UCuaCCaCCG-CG-GGCCG-UUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 104095 0.66 0.784373
Target:  5'- aGGgcGGcGGCGCuCCGcGCGACCgCAGccGCg -3'
miRNA:   3'- -UCuaCCaCCGCG-GGC-CGUUGG-GUU--UG- -5'
23783 5' -57.5 NC_005261.1 + 100810 0.66 0.802598
Target:  5'- cGGAaGGgcgcGuGCGCCUGcGCcGCCCAGGCc -3'
miRNA:   3'- -UCUaCCa---C-CGCGGGC-CGuUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 100277 0.67 0.756021
Target:  5'- ---cGGUGGCGCacgaagCGGCAGaaggcCCCAAAg -3'
miRNA:   3'- ucuaCCACCGCGg-----GCCGUU-----GGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 97764 0.68 0.706681
Target:  5'- ---cGGcGGCGCggCCGGCAucgacuCCCGAGCc -3'
miRNA:   3'- ucuaCCaCCGCG--GGCCGUu-----GGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 97701 0.67 0.736551
Target:  5'- gGGgcGGUGGgGagaCGGCGggugGCCCGGGCg -3'
miRNA:   3'- -UCuaCCACCgCgg-GCCGU----UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 97497 0.66 0.828743
Target:  5'- --uUGGgGGCGCCgGGgCcGCCgGAACg -3'
miRNA:   3'- ucuACCaCCGCGGgCC-GuUGGgUUUG- -5'
23783 5' -57.5 NC_005261.1 + 97027 0.69 0.63517
Target:  5'- ---cGG-GcGCGCCCGGCcGCCCAc-- -3'
miRNA:   3'- ucuaCCaC-CGCGGGCCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 95036 0.69 0.63517
Target:  5'- ---cGGcGGCGCUCGGC-GCCgCAGACc -3'
miRNA:   3'- ucuaCCaCCGCGGGCCGuUGG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 94852 0.69 0.655741
Target:  5'- --cUGGccucGGCGCUCGcGCAcgGCCCGGGCg -3'
miRNA:   3'- ucuACCa---CCGCGGGC-CGU--UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 94292 0.69 0.666003
Target:  5'- cAGAgcaUGGCGUagUCGGCGACCCAGGg -3'
miRNA:   3'- -UCUaccACCGCG--GGCCGUUGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 92934 0.66 0.802598
Target:  5'- ---cGGcGGagcagcuGCCCGGCGuCCCGGACa -3'
miRNA:   3'- ucuaCCaCCg------CGGGCCGUuGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 92012 0.7 0.604315
Target:  5'- cAGGUGGaUGGCcuuGCCCGGgAACaCCAcguACa -3'
miRNA:   3'- -UCUACC-ACCG---CGGGCCgUUG-GGUu--UG- -5'
23783 5' -57.5 NC_005261.1 + 91150 0.69 0.645461
Target:  5'- ----cGUGcCGCCCGGCGagugGCCCGGGCg -3'
miRNA:   3'- ucuacCACcGCGGGCCGU----UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 90397 0.69 0.645461
Target:  5'- cGGcgGGgcUGGCGCCCGGCGcggACUacgcGACg -3'
miRNA:   3'- -UCuaCC--ACCGCGGGCCGU---UGGgu--UUG- -5'
23783 5' -57.5 NC_005261.1 + 89274 0.68 0.716714
Target:  5'- cGAcgGGcUGGCGuuCCCGGCGGCCgCcAACg -3'
miRNA:   3'- uCUa-CC-ACCGC--GGGCCGUUGG-GuUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.