Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23783 | 5' | -57.5 | NC_005261.1 | + | 88148 | 0.66 | 0.81148 |
Target: 5'- cGcgGG-GGCGcCCCGGCcgcgcagccgGGCCgGGGCg -3' miRNA: 3'- uCuaCCaCCGC-GGGCCG----------UUGGgUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 87596 | 0.67 | 0.756021 |
Target: 5'- cGGUGGUcuuGGUG-CCGGCGACCaccGCg -3' miRNA: 3'- uCUACCA---CCGCgGGCCGUUGGguuUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 86654 | 0.66 | 0.792647 |
Target: 5'- gAGuUGGagcugaacaccaUGGCGCCCaccagcccggcgaGGCGGCCCAcguACg -3' miRNA: 3'- -UCuACC------------ACCGCGGG-------------CCGUUGGGUu--UG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 85397 | 0.75 | 0.322555 |
Target: 5'- --cUGGUaGGCGCCCGcG-AGCCCGAGCa -3' miRNA: 3'- ucuACCA-CCGCGGGC-CgUUGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 85278 | 0.68 | 0.706681 |
Target: 5'- uGggGGUuaGGCGUCgGGCu-CCCGGGCg -3' miRNA: 3'- uCuaCCA--CCGCGGgCCGuuGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 84270 | 0.67 | 0.765595 |
Target: 5'- cGGcAUGGcgcaGGUGCcgCCGGCGGCCCcGGCc -3' miRNA: 3'- -UC-UACCa---CCGCG--GGCCGUUGGGuUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 83750 | 0.71 | 0.533369 |
Target: 5'- gAGGUGGcgGcGCGCCaCGGCcgggucgcagcGCCCGAGCa -3' miRNA: 3'- -UCUACCa-C-CGCGG-GCCGu----------UGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 78050 | 0.75 | 0.337571 |
Target: 5'- cGGUGGUcGcGgGCCCGGCccccgcgccGGCCCAGGCg -3' miRNA: 3'- uCUACCA-C-CgCGGGCCG---------UUGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 76593 | 0.69 | 0.666003 |
Target: 5'- gAGcgGGUGGCGCgCGcGCugccGCCCGc-- -3' miRNA: 3'- -UCuaCCACCGCGgGC-CGu---UGGGUuug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 75843 | 0.72 | 0.465612 |
Target: 5'- gGGAgGGgcgcgcGGCGCCgaCGGCGGCCCcGACg -3' miRNA: 3'- -UCUaCCa-----CCGCGG--GCCGUUGGGuUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 75806 | 0.68 | 0.685415 |
Target: 5'- cAGAUcGGcacgcUGGUGCCCGGCGcggccgcGCCCg--- -3' miRNA: 3'- -UCUA-CC-----ACCGCGGGCCGU-------UGGGuuug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 74456 | 0.72 | 0.456291 |
Target: 5'- gGGGUGGgGGCGCCgcccccggcgCGGCGuGCCUggGCg -3' miRNA: 3'- -UCUACCaCCGCGG----------GCCGU-UGGGuuUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 72446 | 0.67 | 0.775049 |
Target: 5'- cGGcgGG-GGCGCCCgcggcgagcgcGGCGAgCgCGAGCg -3' miRNA: 3'- -UCuaCCaCCGCGGG-----------CCGUUgG-GUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 71403 | 0.74 | 0.377297 |
Target: 5'- -cGUGGUaggcGGCGUCCGGCGcggggcccgGCCCGGGCc -3' miRNA: 3'- ucUACCA----CCGCGGGCCGU---------UGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 71217 | 0.71 | 0.533369 |
Target: 5'- cGAUGGUGcGCGCgCGcacGCGGCCCucGGCg -3' miRNA: 3'- uCUACCAC-CGCGgGC---CGUUGGGu-UUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 71076 | 0.68 | 0.726674 |
Target: 5'- cGGcgGGcggGGCGUCCGG--GCCCGAGa -3' miRNA: 3'- -UCuaCCa--CCGCGGGCCguUGGGUUUg -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 70982 | 0.67 | 0.765595 |
Target: 5'- aAGAgcgcGUGGCGCgCgGGCGGCcgCCAGGCc -3' miRNA: 3'- -UCUac--CACCGCG-GgCCGUUG--GGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 68964 | 0.66 | 0.793559 |
Target: 5'- gGGAccUGGUGcGCGCCaCcGCGGCCCu--- -3' miRNA: 3'- -UCU--ACCAC-CGCGG-GcCGUUGGGuuug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 67110 | 0.66 | 0.81148 |
Target: 5'- uGcgGGcGGCGCgcgcagugCGGCGGCCCGAccGCg -3' miRNA: 3'- uCuaCCaCCGCGg-------GCCGUUGGGUU--UG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 65807 | 0.66 | 0.8017 |
Target: 5'- cGGGUcGG-GGUGCCCGgGCGgcggcgcgaagcuGCCCGAGu -3' miRNA: 3'- -UCUA-CCaCCGCGGGC-CGU-------------UGGGUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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