miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 65396 0.69 0.655741
Target:  5'- cGGcgGGUugGGCGgcCCCGGCAGCuCCAc-- -3'
miRNA:   3'- -UCuaCCA--CCGC--GGGCCGUUG-GGUuug -5'
23783 5' -57.5 NC_005261.1 + 64494 0.68 0.676236
Target:  5'- cGGGUGGcgcgGGUGCUCGG-GGCCCGcgGGCg -3'
miRNA:   3'- -UCUACCa---CCGCGGGCCgUUGGGU--UUG- -5'
23783 5' -57.5 NC_005261.1 + 61569 0.66 0.792647
Target:  5'- uGAUGGUGGCGCuggugauggCCguguucgugGGCAgccucccGCCCAccGACa -3'
miRNA:   3'- uCUACCACCGCG---------GG---------CCGU-------UGGGU--UUG- -5'
23783 5' -57.5 NC_005261.1 + 60390 0.72 0.456291
Target:  5'- gAGGUGcGccuccaUGGCGCCgGGcCGGCCCGGGCc -3'
miRNA:   3'- -UCUAC-C------ACCGCGGgCC-GUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 60327 0.67 0.750223
Target:  5'- cAGGUGGacgacgguguuugcGGCGCCgCGGCcgcGCgCCAGGCa -3'
miRNA:   3'- -UCUACCa-------------CCGCGG-GCCGu--UG-GGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 58999 0.66 0.820198
Target:  5'- cGgcGGUG-CGCCgGGCucGCCCAGcgGCg -3'
miRNA:   3'- uCuaCCACcGCGGgCCGu-UGGGUU--UG- -5'
23783 5' -57.5 NC_005261.1 + 58311 0.71 0.513604
Target:  5'- gGGAgGG-GGCgGCCCaGCcGCCCGAGCa -3'
miRNA:   3'- -UCUaCCaCCG-CGGGcCGuUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 55190 0.67 0.756021
Target:  5'- cGGAUcGGcgcacGGCGUagcgcggauCCGGCGGCCCGAGg -3'
miRNA:   3'- -UCUA-CCa----CCGCG---------GGCCGUUGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 52975 0.68 0.706681
Target:  5'- ---cGGUgcGGCG-CCGGCAggcgggggcggcGCCCAGGCg -3'
miRNA:   3'- ucuaCCA--CCGCgGGCCGU------------UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 52727 0.66 0.78159
Target:  5'- gAGAUGc-GGCGCCgCGGCGcgaucggggaagugGCCCGcgagGACg -3'
miRNA:   3'- -UCUACcaCCGCGG-GCCGU--------------UGGGU----UUG- -5'
23783 5' -57.5 NC_005261.1 + 51516 0.66 0.792647
Target:  5'- cAGAUGcugGGCGCCgGGCuggggcugucgcuAGCgCAGACa -3'
miRNA:   3'- -UCUACca-CCGCGGgCCG-------------UUGgGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 50648 0.7 0.583836
Target:  5'- ---gGGUGGCG-CCGGCGaacgcgcucGCCCAAGu -3'
miRNA:   3'- ucuaCCACCGCgGGCCGU---------UGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 50568 0.66 0.81148
Target:  5'- ---cGGUcacGCGCCUGGCGuccGCCgCGAGCg -3'
miRNA:   3'- ucuaCCAc--CGCGGGCCGU---UGG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 45567 0.68 0.676236
Target:  5'- --cUGcUGGCGgCCGGCAACCCc--- -3'
miRNA:   3'- ucuACcACCGCgGGCCGUUGGGuuug -5'
23783 5' -57.5 NC_005261.1 + 44026 0.67 0.746337
Target:  5'- cGGcgGGcGGcCGCCgcgCGGCGGCCgCGGGCg -3'
miRNA:   3'- -UCuaCCaCC-GCGG---GCCGUUGG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 43802 0.68 0.726674
Target:  5'- cGGGUGaGggGGCGCCgGGCGcGCCCu--- -3'
miRNA:   3'- -UCUAC-Ca-CCGCGGgCCGU-UGGGuuug -5'
23783 5' -57.5 NC_005261.1 + 43299 0.72 0.456291
Target:  5'- cGcgGGgGGCG-CCGGCAGCCCGGc- -3'
miRNA:   3'- uCuaCCaCCGCgGGCCGUUGGGUUug -5'
23783 5' -57.5 NC_005261.1 + 39838 0.69 0.612533
Target:  5'- uGAUGGUGacguggauguccCGCCgGGCG-CCCAGGCa -3'
miRNA:   3'- uCUACCACc-----------GCGGgCCGUuGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 39379 0.72 0.465612
Target:  5'- cGGccGGggagGGCgGCCCuggcGGCGACCCGAGCc -3'
miRNA:   3'- -UCuaCCa---CCG-CGGG----CCGUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 38239 0.66 0.828743
Target:  5'- cGGAgcGG-GGCGCCgGGCucgcacgccAGCCUggGCu -3'
miRNA:   3'- -UCUa-CCaCCGCGGgCCG---------UUGGGuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.