miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23783 5' -57.5 NC_005261.1 + 4120 0.73 0.402599
Target:  5'- cGAgcuGUGGC-CCCGGCAGCCCu-GCa -3'
miRNA:   3'- uCUac-CACCGcGGGCCGUUGGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 34933 0.74 0.385612
Target:  5'- cGcgGGgGGCGgCCGGCGcgACCCGGGCc -3'
miRNA:   3'- uCuaCCaCCGCgGGCCGU--UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 71403 0.74 0.377297
Target:  5'- -cGUGGUaggcGGCGUCCGGCGcggggcccgGCCCGGGCc -3'
miRNA:   3'- ucUACCA----CCGCGGGCCGU---------UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 78050 0.75 0.337571
Target:  5'- cGGUGGUcGcGgGCCCGGCccccgcgccGGCCCAGGCg -3'
miRNA:   3'- uCUACCA-C-CgCGGGCCG---------UUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 85397 0.75 0.322555
Target:  5'- --cUGGUaGGCGCCCGcG-AGCCCGAGCa -3'
miRNA:   3'- ucuACCA-CCGCGGGC-CgUUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 27251 0.71 0.509686
Target:  5'- gGGGUGGggcggggugugcgGGCaGCCCGGCcggccCCCGGACc -3'
miRNA:   3'- -UCUACCa------------CCG-CGGGCCGuu---GGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 58311 0.71 0.513604
Target:  5'- gGGAgGG-GGCgGCCCaGCcGCCCGAGCa -3'
miRNA:   3'- -UCUaCCaCCG-CGGGcCGuUGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 97027 0.69 0.63517
Target:  5'- ---cGG-GcGCGCCCGGCcGCCCAc-- -3'
miRNA:   3'- ucuaCCaC-CGCGGGCCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 95036 0.69 0.63517
Target:  5'- ---cGGcGGCGCUCGGC-GCCgCAGACc -3'
miRNA:   3'- ucuaCCaCCGCGGGCCGuUGG-GUUUG- -5'
23783 5' -57.5 NC_005261.1 + 123114 0.69 0.63517
Target:  5'- gGGAaaGUGGCGCuuGGCA-UUCAAGCg -3'
miRNA:   3'- -UCUacCACCGCGggCCGUuGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 5576 0.69 0.63517
Target:  5'- gAGAUGGgGGCGCCgagGGC-GCCCGc-- -3'
miRNA:   3'- -UCUACCaCCGCGGg--CCGuUGGGUuug -5'
23783 5' -57.5 NC_005261.1 + 121779 0.69 0.614589
Target:  5'- gGGGUGGccGCGgCCGGCGGgCUggGCa -3'
miRNA:   3'- -UCUACCacCGCgGGCCGUUgGGuuUG- -5'
23783 5' -57.5 NC_005261.1 + 39838 0.69 0.612533
Target:  5'- uGAUGGUGacguggauguccCGCCgGGCG-CCCAGGCa -3'
miRNA:   3'- uCUACCACc-----------GCGGgCCGUuGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 92012 0.7 0.604315
Target:  5'- cAGGUGGaUGGCcuuGCCCGGgAACaCCAcguACa -3'
miRNA:   3'- -UCUACC-ACCG---CGGGCCgUUG-GGUu--UG- -5'
23783 5' -57.5 NC_005261.1 + 50648 0.7 0.583836
Target:  5'- ---gGGUGGCG-CCGGCGaacgcgcucGCCCAAGu -3'
miRNA:   3'- ucuaCCACCGCgGGCCGU---------UGGGUUUg -5'
23783 5' -57.5 NC_005261.1 + 2982 0.7 0.583836
Target:  5'- gAGGcUGG-GGCucgGCCUGGCGGCCCGGc- -3'
miRNA:   3'- -UCU-ACCaCCG---CGGGCCGUUGGGUUug -5'
23783 5' -57.5 NC_005261.1 + 36835 0.7 0.553399
Target:  5'- cGGUGccGGCGCCCGGgggcUAGCCCGcGCu -3'
miRNA:   3'- uCUACcaCCGCGGGCC----GUUGGGUuUG- -5'
23783 5' -57.5 NC_005261.1 + 132621 0.71 0.542352
Target:  5'- cAGggGGcgcUGGCGCCgaggacgcgggcgCGGCGGCCCuAGCg -3'
miRNA:   3'- -UCuaCC---ACCGCGG-------------GCCGUUGGGuUUG- -5'
23783 5' -57.5 NC_005261.1 + 83750 0.71 0.533369
Target:  5'- gAGGUGGcgGcGCGCCaCGGCcgggucgcagcGCCCGAGCa -3'
miRNA:   3'- -UCUACCa-C-CGCGG-GCCGu----------UGGGUUUG- -5'
23783 5' -57.5 NC_005261.1 + 71217 0.71 0.533369
Target:  5'- cGAUGGUGcGCGCgCGcacGCGGCCCucGGCg -3'
miRNA:   3'- uCUACCAC-CGCGgGC---CGUUGGGu-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.