Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23783 | 5' | -57.5 | NC_005261.1 | + | 4120 | 0.73 | 0.402599 |
Target: 5'- cGAgcuGUGGC-CCCGGCAGCCCu-GCa -3' miRNA: 3'- uCUac-CACCGcGGGCCGUUGGGuuUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 34933 | 0.74 | 0.385612 |
Target: 5'- cGcgGGgGGCGgCCGGCGcgACCCGGGCc -3' miRNA: 3'- uCuaCCaCCGCgGGCCGU--UGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 71403 | 0.74 | 0.377297 |
Target: 5'- -cGUGGUaggcGGCGUCCGGCGcggggcccgGCCCGGGCc -3' miRNA: 3'- ucUACCA----CCGCGGGCCGU---------UGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 78050 | 0.75 | 0.337571 |
Target: 5'- cGGUGGUcGcGgGCCCGGCccccgcgccGGCCCAGGCg -3' miRNA: 3'- uCUACCA-C-CgCGGGCCG---------UUGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 85397 | 0.75 | 0.322555 |
Target: 5'- --cUGGUaGGCGCCCGcG-AGCCCGAGCa -3' miRNA: 3'- ucuACCA-CCGCGGGC-CgUUGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 27251 | 0.71 | 0.509686 |
Target: 5'- gGGGUGGggcggggugugcgGGCaGCCCGGCcggccCCCGGACc -3' miRNA: 3'- -UCUACCa------------CCG-CGGGCCGuu---GGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 58311 | 0.71 | 0.513604 |
Target: 5'- gGGAgGG-GGCgGCCCaGCcGCCCGAGCa -3' miRNA: 3'- -UCUaCCaCCG-CGGGcCGuUGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 97027 | 0.69 | 0.63517 |
Target: 5'- ---cGG-GcGCGCCCGGCcGCCCAc-- -3' miRNA: 3'- ucuaCCaC-CGCGGGCCGuUGGGUuug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 95036 | 0.69 | 0.63517 |
Target: 5'- ---cGGcGGCGCUCGGC-GCCgCAGACc -3' miRNA: 3'- ucuaCCaCCGCGGGCCGuUGG-GUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 123114 | 0.69 | 0.63517 |
Target: 5'- gGGAaaGUGGCGCuuGGCA-UUCAAGCg -3' miRNA: 3'- -UCUacCACCGCGggCCGUuGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 5576 | 0.69 | 0.63517 |
Target: 5'- gAGAUGGgGGCGCCgagGGC-GCCCGc-- -3' miRNA: 3'- -UCUACCaCCGCGGg--CCGuUGGGUuug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 121779 | 0.69 | 0.614589 |
Target: 5'- gGGGUGGccGCGgCCGGCGGgCUggGCa -3' miRNA: 3'- -UCUACCacCGCgGGCCGUUgGGuuUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 39838 | 0.69 | 0.612533 |
Target: 5'- uGAUGGUGacguggauguccCGCCgGGCG-CCCAGGCa -3' miRNA: 3'- uCUACCACc-----------GCGGgCCGUuGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 92012 | 0.7 | 0.604315 |
Target: 5'- cAGGUGGaUGGCcuuGCCCGGgAACaCCAcguACa -3' miRNA: 3'- -UCUACC-ACCG---CGGGCCgUUG-GGUu--UG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 50648 | 0.7 | 0.583836 |
Target: 5'- ---gGGUGGCG-CCGGCGaacgcgcucGCCCAAGu -3' miRNA: 3'- ucuaCCACCGCgGGCCGU---------UGGGUUUg -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 2982 | 0.7 | 0.583836 |
Target: 5'- gAGGcUGG-GGCucgGCCUGGCGGCCCGGc- -3' miRNA: 3'- -UCU-ACCaCCG---CGGGCCGUUGGGUUug -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 36835 | 0.7 | 0.553399 |
Target: 5'- cGGUGccGGCGCCCGGgggcUAGCCCGcGCu -3' miRNA: 3'- uCUACcaCCGCGGGCC----GUUGGGUuUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 132621 | 0.71 | 0.542352 |
Target: 5'- cAGggGGcgcUGGCGCCgaggacgcgggcgCGGCGGCCCuAGCg -3' miRNA: 3'- -UCuaCC---ACCGCGG-------------GCCGUUGGGuUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 83750 | 0.71 | 0.533369 |
Target: 5'- gAGGUGGcgGcGCGCCaCGGCcgggucgcagcGCCCGAGCa -3' miRNA: 3'- -UCUACCa-C-CGCGG-GCCGu----------UGGGUUUG- -5' |
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23783 | 5' | -57.5 | NC_005261.1 | + | 71217 | 0.71 | 0.533369 |
Target: 5'- cGAUGGUGcGCGCgCGcacGCGGCCCucGGCg -3' miRNA: 3'- uCUACCAC-CGCGgGC---CGUUGGGu-UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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