miRNA display CGI


Results 1 - 20 of 351 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23784 3' -58 NC_005261.1 + 48244 0.66 0.84494
Target:  5'- aCCGccCCCGCagCGCGGGgccAAUGCaaGGCg -3'
miRNA:   3'- -GGUu-GGGCG--GCGUCCa--UUACGgcCCG- -5'
23784 3' -58 NC_005261.1 + 60030 0.66 0.84494
Target:  5'- -gAGCCCGCCGCcgucGGc---GCCGacGGCg -3'
miRNA:   3'- ggUUGGGCGGCGu---CCauuaCGGC--CCG- -5'
23784 3' -58 NC_005261.1 + 131406 0.66 0.84494
Target:  5'- aCCGAgcccCCCGCCGCugccGGcagcggcGCCGGcGCc -3'
miRNA:   3'- -GGUU----GGGCGGCGu---CCauua---CGGCC-CG- -5'
23784 3' -58 NC_005261.1 + 31471 0.66 0.84494
Target:  5'- gCGGCCUgagugGCCGCcGGUGcgcGgCGGGCu -3'
miRNA:   3'- gGUUGGG-----CGGCGuCCAUua-CgGCCCG- -5'
23784 3' -58 NC_005261.1 + 59575 0.66 0.84494
Target:  5'- --cGCgCGCCGCAGcgGGUGCCGcGCc -3'
miRNA:   3'- gguUGgGCGGCGUCcaUUACGGCcCG- -5'
23784 3' -58 NC_005261.1 + 15493 0.66 0.84494
Target:  5'- gCC-GCUCGCUGCGGGcggggcguGUGUCGGcGUg -3'
miRNA:   3'- -GGuUGGGCGGCGUCCau------UACGGCC-CG- -5'
23784 3' -58 NC_005261.1 + 1496 0.66 0.84494
Target:  5'- gCCA--CCGCCGCGGccGgcAgcucGUCGGGCg -3'
miRNA:   3'- -GGUugGGCGGCGUC--CauUa---CGGCCCG- -5'
23784 3' -58 NC_005261.1 + 118160 0.66 0.84494
Target:  5'- gCUGGCCguCGCgGCGGGgcuUGCCgucuGGGCc -3'
miRNA:   3'- -GGUUGG--GCGgCGUCCauuACGG----CCCG- -5'
23784 3' -58 NC_005261.1 + 12125 0.66 0.844147
Target:  5'- gCCAggauggcGCCCGCCGCcgcGGcg--GCCGcGCa -3'
miRNA:   3'- -GGU-------UGGGCGGCGu--CCauuaCGGCcCG- -5'
23784 3' -58 NC_005261.1 + 78147 0.66 0.842555
Target:  5'- cCCGgcGCCCGCCGCugccGGcgg-GCCaccugaggagcccgGGGCc -3'
miRNA:   3'- -GGU--UGGGCGGCGu---CCauuaCGG--------------CCCG- -5'
23784 3' -58 NC_005261.1 + 52343 0.66 0.836923
Target:  5'- --cGCCCGCCGC-GcUGccGCCGGaGCc -3'
miRNA:   3'- gguUGGGCGGCGuCcAUuaCGGCC-CG- -5'
23784 3' -58 NC_005261.1 + 103909 0.66 0.836923
Target:  5'- gCCAcCCgCGCCGcCAGGUcg-GgCGcGGCg -3'
miRNA:   3'- -GGUuGG-GCGGC-GUCCAuuaCgGC-CCG- -5'
23784 3' -58 NC_005261.1 + 130844 0.66 0.836923
Target:  5'- cUCAACCuUGCgCGCGcgcccgGCCGGGCg -3'
miRNA:   3'- -GGUUGG-GCG-GCGUccauuaCGGCCCG- -5'
23784 3' -58 NC_005261.1 + 15755 0.66 0.836923
Target:  5'- gCCGACCgccuCGCCGCgauacacaAGGccgcUGgCGGGCg -3'
miRNA:   3'- -GGUUGG----GCGGCG--------UCCauu-ACgGCCCG- -5'
23784 3' -58 NC_005261.1 + 96238 0.66 0.836923
Target:  5'- aCCuuCCUcCCGCGGGUGGUGCa--GCu -3'
miRNA:   3'- -GGuuGGGcGGCGUCCAUUACGgccCG- -5'
23784 3' -58 NC_005261.1 + 72744 0.66 0.836923
Target:  5'- nCGGCCCGCaugGCGGGccgcAUGCCcagcacGGCg -3'
miRNA:   3'- gGUUGGGCGg--CGUCCau--UACGGc-----CCG- -5'
23784 3' -58 NC_005261.1 + 121171 0.66 0.836923
Target:  5'- cCCGggcGCUCGgUGCAcGGggccgggGCCGGGCc -3'
miRNA:   3'- -GGU---UGGGCgGCGU-CCauua---CGGCCCG- -5'
23784 3' -58 NC_005261.1 + 37420 0.66 0.836923
Target:  5'- gCCAACCCcuacGCCGUGGc----GCgCGGGCu -3'
miRNA:   3'- -GGUUGGG----CGGCGUCcauuaCG-GCCCG- -5'
23784 3' -58 NC_005261.1 + 108163 0.66 0.836923
Target:  5'- gCAGCgCGuCCGcCAGGgcgcGcgGCCGcGGCu -3'
miRNA:   3'- gGUUGgGC-GGC-GUCCa---UuaCGGC-CCG- -5'
23784 3' -58 NC_005261.1 + 67412 0.66 0.836923
Target:  5'- aCCAGCgCCGCCaGCAGcGcccGcgGCCagcgcccaaaGGGCa -3'
miRNA:   3'- -GGUUG-GGCGG-CGUC-Ca--UuaCGG----------CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.