miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23784 5' -56 NC_005261.1 + 66025 0.66 0.869407
Target:  5'- -cGCCggCGCGUCguaGUCGGCGGCcACGg -3'
miRNA:   3'- uaCGGg-GCGCAG---UAGUUGCCGuUGUa -5'
23784 5' -56 NC_005261.1 + 35448 0.66 0.869407
Target:  5'- -cGCCCCGCGg-GUCuaggcGCGGCGcgcGCGc -3'
miRNA:   3'- uaCGGGGCGCagUAGu----UGCCGU---UGUa -5'
23784 5' -56 NC_005261.1 + 2416 0.66 0.869407
Target:  5'- -gGCCCCGCG-CggCGGCgGGCcGCGa -3'
miRNA:   3'- uaCGGGGCGCaGuaGUUG-CCGuUGUa -5'
23784 5' -56 NC_005261.1 + 34017 0.66 0.869407
Target:  5'- cUGCCUCGaCGUgAUCAcCGGCGcgGCGc -3'
miRNA:   3'- uACGGGGC-GCAgUAGUuGCCGU--UGUa -5'
23784 5' -56 NC_005261.1 + 87651 0.66 0.869407
Target:  5'- gGUGagCCCGCG-CAcCAGgGGCAGCAc -3'
miRNA:   3'- -UACg-GGGCGCaGUaGUUgCCGUUGUa -5'
23784 5' -56 NC_005261.1 + 115269 0.66 0.869407
Target:  5'- -cGCCgCCGCG-CGUCugggacGCGgGCAGCAg -3'
miRNA:   3'- uaCGG-GGCGCaGUAGu-----UGC-CGUUGUa -5'
23784 5' -56 NC_005261.1 + 57903 0.66 0.869407
Target:  5'- -gGCCaCCGCGUCGcggaaGACGGCccGCAc -3'
miRNA:   3'- uaCGG-GGCGCAGUag---UUGCCGu-UGUa -5'
23784 5' -56 NC_005261.1 + 122237 0.66 0.861701
Target:  5'- -gGCCCCGaCGcgCAUCAGCagGGcCAGCGc -3'
miRNA:   3'- uaCGGGGC-GCa-GUAGUUG--CC-GUUGUa -5'
23784 5' -56 NC_005261.1 + 47691 0.66 0.861701
Target:  5'- -gGCcgCCCGCGgcgccgCGUCGGCGGCGuCGg -3'
miRNA:   3'- uaCG--GGGCGCa-----GUAGUUGCCGUuGUa -5'
23784 5' -56 NC_005261.1 + 133782 0.66 0.856972
Target:  5'- -cGCCCUcguGCGgcgCAucccgcccgggcugcUCGACGGCGACGa -3'
miRNA:   3'- uaCGGGG---CGCa--GU---------------AGUUGCCGUUGUa -5'
23784 5' -56 NC_005261.1 + 75868 0.66 0.852166
Target:  5'- -gGCCCCGaCGgcgccgugggcgCGcgCAGCGGCGACGc -3'
miRNA:   3'- uaCGGGGC-GCa-----------GUa-GUUGCCGUUGUa -5'
23784 5' -56 NC_005261.1 + 113872 0.66 0.84564
Target:  5'- uGUGCUCCGgGUgcCAccugUAGCGGCGACGc -3'
miRNA:   3'- -UACGGGGCgCA--GUa---GUUGCCGUUGUa -5'
23784 5' -56 NC_005261.1 + 51159 0.66 0.84564
Target:  5'- -gGCCCUGCGgcggcgCAUCAuaugaacgcGCuGGCGACGc -3'
miRNA:   3'- uaCGGGGCGCa-----GUAGU---------UG-CCGUUGUa -5'
23784 5' -56 NC_005261.1 + 134752 0.66 0.84564
Target:  5'- -gGCaCCCGCGacCcgCGGCGGCAugGc -3'
miRNA:   3'- uaCG-GGGCGCa-GuaGUUGCCGUugUa -5'
23784 5' -56 NC_005261.1 + 131992 0.66 0.84564
Target:  5'- -gGCCUuCGCaGUCGcgGACGGCGACAa -3'
miRNA:   3'- uaCGGG-GCG-CAGUagUUGCCGUUGUa -5'
23784 5' -56 NC_005261.1 + 103847 0.66 0.84564
Target:  5'- -cGCCCuugCGCGcgagCcgCGGCGGCGGCGg -3'
miRNA:   3'- uaCGGG---GCGCa---GuaGUUGCCGUUGUa -5'
23784 5' -56 NC_005261.1 + 1672 0.66 0.84564
Target:  5'- cAUGuCCuuGCGccCGUCGagccGCGGCAGCAc -3'
miRNA:   3'- -UAC-GGggCGCa-GUAGU----UGCCGUUGUa -5'
23784 5' -56 NC_005261.1 + 102572 0.66 0.837299
Target:  5'- -cGCCUCGcCGUCcgCGuCGGCGGCc- -3'
miRNA:   3'- uaCGGGGC-GCAGuaGUuGCCGUUGua -5'
23784 5' -56 NC_005261.1 + 100647 0.66 0.837299
Target:  5'- -cGgCCCGCG-CcgCAACGGCGcGCGUc -3'
miRNA:   3'- uaCgGGGCGCaGuaGUUGCCGU-UGUA- -5'
23784 5' -56 NC_005261.1 + 24376 0.66 0.837299
Target:  5'- gGUGCuCCCgGUGggcUCGUCGGCGGCGggGCGg -3'
miRNA:   3'- -UACG-GGG-CGC---AGUAGUUGCCGU--UGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.