miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23785 3' -54.2 NC_005261.1 + 124568 0.66 0.950946
Target:  5'- aGGCGCGccGCucGCGCAccacgcgcugauCGUUGGGCg -3'
miRNA:   3'- gCUGCGCuuUGuaCGCGU------------GCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 64039 0.66 0.950946
Target:  5'- uCGGCGCGGcuC-UGCGC-CGCgUGGuGCg -3'
miRNA:   3'- -GCUGCGCUuuGuACGCGuGCG-ACC-UG- -5'
23785 3' -54.2 NC_005261.1 + 69463 0.66 0.950946
Target:  5'- gCGGCGCGucgagggccACAUccGCGCgAUGCUGGuGCa -3'
miRNA:   3'- -GCUGCGCuu-------UGUA--CGCG-UGCGACC-UG- -5'
23785 3' -54.2 NC_005261.1 + 33825 0.66 0.950946
Target:  5'- gCGGcCGgGggGCGcGgGCccccugGCGCUGGGCg -3'
miRNA:   3'- -GCU-GCgCuuUGUaCgCG------UGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 115921 0.66 0.950946
Target:  5'- cCGGC-CGccGCGUcCGCGCGCgGGGCa -3'
miRNA:   3'- -GCUGcGCuuUGUAcGCGUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 129968 0.66 0.950946
Target:  5'- gGGCgGCcAGGCAagugucGCGCauGCGCUGGGCg -3'
miRNA:   3'- gCUG-CGcUUUGUa-----CGCG--UGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 44257 0.66 0.950946
Target:  5'- cCGACGCc--GCG-GCGCGCGgggGGGCg -3'
miRNA:   3'- -GCUGCGcuuUGUaCGCGUGCga-CCUG- -5'
23785 3' -54.2 NC_005261.1 + 108065 0.66 0.950946
Target:  5'- gGugGuCGuguaGUGCGCgagguagucgGCGCUGGGCc -3'
miRNA:   3'- gCugC-GCuuugUACGCG----------UGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 116523 0.66 0.950946
Target:  5'- gCGGCGCGAGGCccGCcgcuccgcgcccGCGCGCgucauacaagGGAa -3'
miRNA:   3'- -GCUGCGCUUUGuaCG------------CGUGCGa---------CCUg -5'
23785 3' -54.2 NC_005261.1 + 104656 0.66 0.950525
Target:  5'- aCGaACGCGcuggcGGGCGUGUGCugcggcaGCGCcUGGGCc -3'
miRNA:   3'- -GC-UGCGC-----UUUGUACGCG-------UGCG-ACCUG- -5'
23785 3' -54.2 NC_005261.1 + 42329 0.66 0.950525
Target:  5'- aGGuCGCGGAAC-UGCacguccuGgAUGCUGGGCg -3'
miRNA:   3'- gCU-GCGCUUUGuACG-------CgUGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 43115 0.66 0.949677
Target:  5'- uGGCGCGGGauuggcgcgccuacACAcGCGCGCGC-GGcCu -3'
miRNA:   3'- gCUGCGCUU--------------UGUaCGCGUGCGaCCuG- -5'
23785 3' -54.2 NC_005261.1 + 56242 0.66 0.946634
Target:  5'- aGACGguCGucccGGGCGUGgGCACGCUGcACg -3'
miRNA:   3'- gCUGC--GC----UUUGUACgCGUGCGACcUG- -5'
23785 3' -54.2 NC_005261.1 + 93575 0.66 0.946634
Target:  5'- gCGGCGgGAcGCGauCGCGCGCUcGGCg -3'
miRNA:   3'- -GCUGCgCUuUGUacGCGUGCGAcCUG- -5'
23785 3' -54.2 NC_005261.1 + 133736 0.66 0.946634
Target:  5'- gCGGCGCGGAcaACGccaCGCGCGCgaucGACg -3'
miRNA:   3'- -GCUGCGCUU--UGUac-GCGUGCGac--CUG- -5'
23785 3' -54.2 NC_005261.1 + 23476 0.66 0.946634
Target:  5'- gCGGCgGCGA---GUGCGCGggccCGCcUGGGCa -3'
miRNA:   3'- -GCUG-CGCUuugUACGCGU----GCG-ACCUG- -5'
23785 3' -54.2 NC_005261.1 + 29912 0.66 0.946634
Target:  5'- -cGCGCGAGcgGC-UGCGCGaGCUGG-Cg -3'
miRNA:   3'- gcUGCGCUU--UGuACGCGUgCGACCuG- -5'
23785 3' -54.2 NC_005261.1 + 70198 0.66 0.946634
Target:  5'- gGAgGCGggGguUGaagacggGCAUGCUGGAg -3'
miRNA:   3'- gCUgCGCuuUguACg------CGUGCGACCUg -5'
23785 3' -54.2 NC_005261.1 + 123172 0.66 0.946634
Target:  5'- gGGCGCGcGGGCGUGgugGCugGUgUGGGCg -3'
miRNA:   3'- gCUGCGC-UUUGUACg--CGugCG-ACCUG- -5'
23785 3' -54.2 NC_005261.1 + 43433 0.66 0.946634
Target:  5'- cCGGCGgGGAGCugGCucgGCGC-CUGGACg -3'
miRNA:   3'- -GCUGCgCUUUGuaCG---CGUGcGACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.