miRNA display CGI


Results 1 - 20 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23785 3' -54.2 NC_005261.1 + 92744 0.66 0.932234
Target:  5'- gGACaGCGAGcgccGCccGCGC-CGCUcGGACc -3'
miRNA:   3'- gCUG-CGCUU----UGuaCGCGuGCGA-CCUG- -5'
23785 3' -54.2 NC_005261.1 + 49443 0.66 0.93728
Target:  5'- -aGCGCG-AGCccGCGCGCGCcgcGGAa -3'
miRNA:   3'- gcUGCGCuUUGuaCGCGUGCGa--CCUg -5'
23785 3' -54.2 NC_005261.1 + 20855 0.66 0.93728
Target:  5'- gCGugGCGGcuCuUGCGC-CGC-GGGCc -3'
miRNA:   3'- -GCugCGCUuuGuACGCGuGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 54258 0.66 0.92694
Target:  5'- -aGCGCGcccuGGCGccGCGCACaCUGGACc -3'
miRNA:   3'- gcUGCGCu---UUGUa-CGCGUGcGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 14456 0.66 0.932234
Target:  5'- gGGCGCGcgGCGgaGCuCGCGCUGGuCc -3'
miRNA:   3'- gCUGCGCuuUGUa-CGcGUGCGACCuG- -5'
23785 3' -54.2 NC_005261.1 + 2521 0.66 0.929087
Target:  5'- gCGACcuCGggGCGgcaguaggccgccaGCGCcgcgGCGCUGGGCg -3'
miRNA:   3'- -GCUGc-GCuuUGUa-------------CGCG----UGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 30186 0.66 0.92694
Target:  5'- -cGCGcCGAGGCGgccGC-CGCGCUGGAg -3'
miRNA:   3'- gcUGC-GCUUUGUa--CGcGUGCGACCUg -5'
23785 3' -54.2 NC_005261.1 + 115921 0.66 0.950946
Target:  5'- cCGGC-CGccGCGUcCGCGCGCgGGGCa -3'
miRNA:   3'- -GCUGcGCuuUGUAcGCGUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 14162 0.66 0.932234
Target:  5'- aGcCGCG-AACG-GCGCGCGUcucgGGGCg -3'
miRNA:   3'- gCuGCGCuUUGUaCGCGUGCGa---CCUG- -5'
23785 3' -54.2 NC_005261.1 + 74888 0.66 0.93728
Target:  5'- gCGGCgGCGGAGUcgGCGgccCGCGCUGGcCg -3'
miRNA:   3'- -GCUG-CGCUUUGuaCGC---GUGCGACCuG- -5'
23785 3' -54.2 NC_005261.1 + 87488 0.66 0.93728
Target:  5'- uCGGCGCGGc-CGUGCugGCGCGCaGGcGCu -3'
miRNA:   3'- -GCUGCGCUuuGUACG--CGUGCGaCC-UG- -5'
23785 3' -54.2 NC_005261.1 + 129568 0.66 0.926397
Target:  5'- gGGCGUagaggagGAGGCGgccGCGCGCcGCgGGACa -3'
miRNA:   3'- gCUGCG-------CUUUGUa--CGCGUG-CGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 74675 0.66 0.92694
Target:  5'- gGACGCGGAcGCGaccGCGCGggaGCUGGcCg -3'
miRNA:   3'- gCUGCGCUU-UGUa--CGCGUg--CGACCuG- -5'
23785 3' -54.2 NC_005261.1 + 75987 0.66 0.932234
Target:  5'- gGGCGCGGcc---GCccuCGCGCUGGACg -3'
miRNA:   3'- gCUGCGCUuuguaCGc--GUGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 135302 0.66 0.932234
Target:  5'- -cGCGCGAccGGCGUGuCGC-C-CUGGGCg -3'
miRNA:   3'- gcUGCGCU--UUGUAC-GCGuGcGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 76077 0.66 0.92694
Target:  5'- gGGCGgGcuGC-UGCGCcucgugGCGCUGGAg -3'
miRNA:   3'- gCUGCgCuuUGuACGCG------UGCGACCUg -5'
23785 3' -54.2 NC_005261.1 + 23183 0.66 0.932234
Target:  5'- gGGgGCGAcAGCGaGCGCGcCGCgGGGCc -3'
miRNA:   3'- gCUgCGCU-UUGUaCGCGU-GCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 44200 0.66 0.936291
Target:  5'- gCGAgCGCGAGcuGCAggcggcccgggaGCGCGCGCUGcuGGCc -3'
miRNA:   3'- -GCU-GCGCUU--UGUa-----------CGCGUGCGAC--CUG- -5'
23785 3' -54.2 NC_005261.1 + 99340 0.66 0.932234
Target:  5'- cCGGCGCGcccAGCAgcagcGCGCACGU--GACg -3'
miRNA:   3'- -GCUGCGCu--UUGUa----CGCGUGCGacCUG- -5'
23785 3' -54.2 NC_005261.1 + 102486 0.66 0.92694
Target:  5'- uCGGCGCGccGCc-GCGCcaGCGCcUGGGCc -3'
miRNA:   3'- -GCUGCGCuuUGuaCGCG--UGCG-ACCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.