miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23785 3' -54.2 NC_005261.1 + 23476 0.66 0.946634
Target:  5'- gCGGCgGCGA---GUGCGCGggccCGCcUGGGCa -3'
miRNA:   3'- -GCUG-CGCUuugUACGCGU----GCG-ACCUG- -5'
23785 3' -54.2 NC_005261.1 + 135302 0.66 0.932234
Target:  5'- -cGCGCGAccGGCGUGuCGC-C-CUGGGCg -3'
miRNA:   3'- gcUGCGCU--UUGUAC-GCGuGcGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 93575 0.66 0.946634
Target:  5'- gCGGCGgGAcGCGauCGCGCGCUcGGCg -3'
miRNA:   3'- -GCUGCgCUuUGUacGCGUGCGAcCUG- -5'
23785 3' -54.2 NC_005261.1 + 20855 0.66 0.93728
Target:  5'- gCGugGCGGcuCuUGCGC-CGC-GGGCc -3'
miRNA:   3'- -GCugCGCUuuGuACGCGuGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 129568 0.66 0.926397
Target:  5'- gGGCGUagaggagGAGGCGgccGCGCGCcGCgGGACa -3'
miRNA:   3'- gCUGCG-------CUUUGUa--CGCGUG-CGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 115921 0.66 0.950946
Target:  5'- cCGGC-CGccGCGUcCGCGCGCgGGGCa -3'
miRNA:   3'- -GCUGcGCuuUGUAcGCGUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 44200 0.66 0.936291
Target:  5'- gCGAgCGCGAGcuGCAggcggcccgggaGCGCGCGCUGcuGGCc -3'
miRNA:   3'- -GCU-GCGCUU--UGUa-----------CGCGUGCGAC--CUG- -5'
23785 3' -54.2 NC_005261.1 + 15474 0.66 0.942079
Target:  5'- uCGAcCGCGGcgGACAcGCGCcgcuCGCUgcGGGCg -3'
miRNA:   3'- -GCU-GCGCU--UUGUaCGCGu---GCGA--CCUG- -5'
23785 3' -54.2 NC_005261.1 + 131494 0.66 0.942079
Target:  5'- uCGACGCcuucuuccGgcACGUGCGCGCGCa---- -3'
miRNA:   3'- -GCUGCG--------CuuUGUACGCGUGCGaccug -5'
23785 3' -54.2 NC_005261.1 + 43115 0.66 0.949677
Target:  5'- uGGCGCGGGauuggcgcgccuacACAcGCGCGCGC-GGcCu -3'
miRNA:   3'- gCUGCGCUU--------------UGUaCGCGUGCGaCCuG- -5'
23785 3' -54.2 NC_005261.1 + 76591 0.66 0.946634
Target:  5'- gCGA-GCGGGugGcGCGCGCGCUGc-- -3'
miRNA:   3'- -GCUgCGCUUugUaCGCGUGCGACcug -5'
23785 3' -54.2 NC_005261.1 + 56242 0.66 0.946634
Target:  5'- aGACGguCGucccGGGCGUGgGCACGCUGcACg -3'
miRNA:   3'- gCUGC--GC----UUUGUACgCGUGCGACcUG- -5'
23785 3' -54.2 NC_005261.1 + 42329 0.66 0.950525
Target:  5'- aGGuCGCGGAAC-UGCacguccuGgAUGCUGGGCg -3'
miRNA:   3'- gCU-GCGCUUUGuACG-------CgUGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 54258 0.66 0.92694
Target:  5'- -aGCGCGcccuGGCGccGCGCACaCUGGACc -3'
miRNA:   3'- gcUGCGCu---UUGUa-CGCGUGcGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 92744 0.66 0.932234
Target:  5'- gGACaGCGAGcgccGCccGCGC-CGCUcGGACc -3'
miRNA:   3'- gCUG-CGCUU----UGuaCGCGuGCGA-CCUG- -5'
23785 3' -54.2 NC_005261.1 + 14456 0.66 0.932234
Target:  5'- gGGCGCGcgGCGgaGCuCGCGCUGGuCc -3'
miRNA:   3'- gCUGCGCuuUGUa-CGcGUGCGACCuG- -5'
23785 3' -54.2 NC_005261.1 + 96871 0.66 0.93728
Target:  5'- gGGCGCGGguAGCGUGCGgaucCGCGCcucGGCg -3'
miRNA:   3'- gCUGCGCU--UUGUACGC----GUGCGac-CUG- -5'
23785 3' -54.2 NC_005261.1 + 133736 0.66 0.946634
Target:  5'- gCGGCGCGGAcaACGccaCGCGCGCgaucGACg -3'
miRNA:   3'- -GCUGCGCUU--UGUac-GCGUGCGac--CUG- -5'
23785 3' -54.2 NC_005261.1 + 70198 0.66 0.946634
Target:  5'- gGAgGCGggGguUGaagacggGCAUGCUGGAg -3'
miRNA:   3'- gCUgCGCuuUguACg------CGUGCGACCUg -5'
23785 3' -54.2 NC_005261.1 + 14162 0.66 0.932234
Target:  5'- aGcCGCG-AACG-GCGCGCGUcucgGGGCg -3'
miRNA:   3'- gCuGCGCuUUGUaCGCGUGCGa---CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.