Results 1 - 20 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23785 | 3' | -54.2 | NC_005261.1 | + | 113538 | 0.87 | 0.112305 |
Target: 5'- cCGGCuCGggGcCGUGCGCGCGCUGGACc -3' miRNA: 3'- -GCUGcGCuuU-GUACGCGUGCGACCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 69357 | 0.85 | 0.142507 |
Target: 5'- aCGACGCGGc-CGcGCGCGCGCUGGACc -3' miRNA: 3'- -GCUGCGCUuuGUaCGCGUGCGACCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 36636 | 0.82 | 0.220353 |
Target: 5'- aCGGCGCGAAGCcgGCGCGCGggcuugGGGCc -3' miRNA: 3'- -GCUGCGCUUUGuaCGCGUGCga----CCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 83656 | 0.81 | 0.243306 |
Target: 5'- gCGGCGUGAGGCGgacGCGCGC-CUGGGCg -3' miRNA: 3'- -GCUGCGCUUUGUa--CGCGUGcGACCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 115342 | 0.79 | 0.32412 |
Target: 5'- gGACGUGuacuuCAUGCGCACGCUGuGCg -3' miRNA: 3'- gCUGCGCuuu--GUACGCGUGCGACcUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 131766 | 0.79 | 0.331689 |
Target: 5'- cCGGCGCG--GCggGCGCGcCGCUGGGCc -3' miRNA: 3'- -GCUGCGCuuUGuaCGCGU-GCGACCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 122635 | 0.78 | 0.363252 |
Target: 5'- gCGAgCGCGAGGCccgGCGCGCGUacgUGGGCg -3' miRNA: 3'- -GCU-GCGCUUUGua-CGCGUGCG---ACCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 38520 | 0.78 | 0.371462 |
Target: 5'- aGGCGCGcgcuGGC-UGCGCGCGCcGGGCa -3' miRNA: 3'- gCUGCGCu---UUGuACGCGUGCGaCCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 80085 | 0.78 | 0.383165 |
Target: 5'- gGACGCG-GACcgGCGCGCGCgccgcgguaccggcuUGGGCg -3' miRNA: 3'- gCUGCGCuUUGuaCGCGUGCG---------------ACCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 137744 | 0.77 | 0.388256 |
Target: 5'- gGGC-CGAAAUcgGCGCGCGCggGGGCg -3' miRNA: 3'- gCUGcGCUUUGuaCGCGUGCGa-CCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 61 | 0.77 | 0.388256 |
Target: 5'- gGGC-CGAAAUcgGCGCGCGCggGGGCg -3' miRNA: 3'- gCUGcGCUUUGuaCGCGUGCGa-CCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 75610 | 0.77 | 0.396838 |
Target: 5'- gGACGCGGAcgGCGUcGCGUACG-UGGACg -3' miRNA: 3'- gCUGCGCUU--UGUA-CGCGUGCgACCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 69531 | 0.77 | 0.396838 |
Target: 5'- uGGCGCGGGcGCuggcGCGCGCGCUGGGg -3' miRNA: 3'- gCUGCGCUU-UGua--CGCGUGCGACCUg -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 76462 | 0.77 | 0.414364 |
Target: 5'- gCGACgGCGgcGCcgGCGCGCGCgcGGACc -3' miRNA: 3'- -GCUG-CGCuuUGuaCGCGUGCGa-CCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 13678 | 0.77 | 0.414364 |
Target: 5'- gGGCGCGggGCGcGCGgGCGUgGGGCg -3' miRNA: 3'- gCUGCGCuuUGUaCGCgUGCGaCCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 65359 | 0.77 | 0.414364 |
Target: 5'- uGACGCGggGCAUGgccCGCACGCccGGCa -3' miRNA: 3'- gCUGCGCuuUGUAC---GCGUGCGacCUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 69199 | 0.76 | 0.454538 |
Target: 5'- gGACGCGGccAACGacguccuccgggagcUGUGCGCGCUGGGg -3' miRNA: 3'- gCUGCGCU--UUGU---------------ACGCGUGCGACCUg -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 17502 | 0.76 | 0.460179 |
Target: 5'- aGACGCGGAGCAUGggcuCGUACGCaGGGu -3' miRNA: 3'- gCUGCGCUUUGUAC----GCGUGCGaCCUg -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 67101 | 0.76 | 0.460179 |
Target: 5'- gCGACGCGguGCGggcgGCGCGCGCagUGcGGCg -3' miRNA: 3'- -GCUGCGCuuUGUa---CGCGUGCG--AC-CUG- -5' |
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23785 | 3' | -54.2 | NC_005261.1 | + | 114272 | 0.76 | 0.479245 |
Target: 5'- aCGACGCGGug---GCGCGCGC-GGGCu -3' miRNA: 3'- -GCUGCGCUuuguaCGCGUGCGaCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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