miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23785 3' -54.2 NC_005261.1 + 120328 0.75 0.518478
Target:  5'- aGGCGCGcuGCGUccccgaGCGCgucucccuGCGCUGGACg -3'
miRNA:   3'- gCUGCGCuuUGUA------CGCG--------UGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 13045 0.75 0.518478
Target:  5'- gGGCGCGggGCc-GCGCGCGCcccugccGGGCg -3'
miRNA:   3'- gCUGCGCuuUGuaCGCGUGCGa------CCUG- -5'
23785 3' -54.2 NC_005261.1 + 110910 0.75 0.528489
Target:  5'- gCGACGCGAcgguguuCcUGC-CGCGCUGGGCa -3'
miRNA:   3'- -GCUGCGCUuu-----GuACGcGUGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 22586 0.74 0.538571
Target:  5'- gCGGCG-GAGGCG-GCGCACGCUGccGGCg -3'
miRNA:   3'- -GCUGCgCUUUGUaCGCGUGCGAC--CUG- -5'
23785 3' -54.2 NC_005261.1 + 48034 0.74 0.538571
Target:  5'- gGGCGaGGAGCAcGCGCGCGCggucgGGGCc -3'
miRNA:   3'- gCUGCgCUUUGUaCGCGUGCGa----CCUG- -5'
23785 3' -54.2 NC_005261.1 + 75483 0.74 0.548717
Target:  5'- gCGGCGCGGGccgcuACGaGCGCgggGCGCUGGAg -3'
miRNA:   3'- -GCUGCGCUU-----UGUaCGCG---UGCGACCUg -5'
23785 3' -54.2 NC_005261.1 + 89109 0.74 0.548717
Target:  5'- uGGCGCGcgcguGGCAcUGCGCGCGCcGGAg -3'
miRNA:   3'- gCUGCGCu----UUGU-ACGCGUGCGaCCUg -5'
23785 3' -54.2 NC_005261.1 + 35151 0.74 0.548717
Target:  5'- gCGGCGC-AAGCAcGCGCAUGC-GGACc -3'
miRNA:   3'- -GCUGCGcUUUGUaCGCGUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 105127 0.74 0.558923
Target:  5'- gGGCGCGGGccGCcgGCGCGCGCaGGuCc -3'
miRNA:   3'- gCUGCGCUU--UGuaCGCGUGCGaCCuG- -5'
23785 3' -54.2 NC_005261.1 + 90433 0.74 0.558923
Target:  5'- uCGACGUG-GGCggGCGCGCGCUGcACu -3'
miRNA:   3'- -GCUGCGCuUUGuaCGCGUGCGACcUG- -5'
23785 3' -54.2 NC_005261.1 + 81757 0.74 0.569181
Target:  5'- gGACGCGAAGacgGCGCGgGCcaGGACg -3'
miRNA:   3'- gCUGCGCUUUguaCGCGUgCGa-CCUG- -5'
23785 3' -54.2 NC_005261.1 + 22745 0.74 0.569181
Target:  5'- gGGCGCGggGCGgcgGCGgccCACGCgucuggGGGCg -3'
miRNA:   3'- gCUGCGCuuUGUa--CGC---GUGCGa-----CCUG- -5'
23785 3' -54.2 NC_005261.1 + 30265 0.74 0.579485
Target:  5'- gCGGCGCGGcGGCccGCGCGCccgcCUGGACg -3'
miRNA:   3'- -GCUGCGCU-UUGuaCGCGUGc---GACCUG- -5'
23785 3' -54.2 NC_005261.1 + 134902 0.73 0.589829
Target:  5'- gGugGUGGAGCggGUGCGCAagcgcaaGCUGGAg -3'
miRNA:   3'- gCugCGCUUUG--UACGCGUg------CGACCUg -5'
23785 3' -54.2 NC_005261.1 + 131901 0.73 0.589829
Target:  5'- aCGGCGCGcacccgcuGGACGggcuuuuugGCGCGCGCgGGACc -3'
miRNA:   3'- -GCUGCGC--------UUUGUa--------CGCGUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 119245 0.73 0.589829
Target:  5'- cCGAuCGCGGccaucuucGCAUGCGCGCuccugcucGCUGGGCg -3'
miRNA:   3'- -GCU-GCGCUu-------UGUACGCGUG--------CGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 32550 0.73 0.589829
Target:  5'- gCGGCGCG-GGCcgGCGCGCG-UGGAa -3'
miRNA:   3'- -GCUGCGCuUUGuaCGCGUGCgACCUg -5'
23785 3' -54.2 NC_005261.1 + 19254 0.73 0.600204
Target:  5'- gGGCGCuGAACA-GCGCGCGCgGGuACg -3'
miRNA:   3'- gCUGCGcUUUGUaCGCGUGCGaCC-UG- -5'
23785 3' -54.2 NC_005261.1 + 88815 0.73 0.600204
Target:  5'- cCGGCgGCGggGCGgcgGCGCGCGCcGGcCc -3'
miRNA:   3'- -GCUG-CGCuuUGUa--CGCGUGCGaCCuG- -5'
23785 3' -54.2 NC_005261.1 + 136607 0.73 0.610603
Target:  5'- -aGCGUGGAGCGgcGCGCGCGCgccgaGGGCg -3'
miRNA:   3'- gcUGCGCUUUGUa-CGCGUGCGa----CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.