miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23785 3' -54.2 NC_005261.1 + 93575 0.66 0.946634
Target:  5'- gCGGCGgGAcGCGauCGCGCGCUcGGCg -3'
miRNA:   3'- -GCUGCgCUuUGUacGCGUGCGAcCUG- -5'
23785 3' -54.2 NC_005261.1 + 49214 0.66 0.946189
Target:  5'- gGGCGgGAGGCcgGCGCccagcgcGCGCaGGuCg -3'
miRNA:   3'- gCUGCgCUUUGuaCGCG-------UGCGaCCuG- -5'
23785 3' -54.2 NC_005261.1 + 131494 0.66 0.942079
Target:  5'- uCGACGCcuucuuccGgcACGUGCGCGCGCa---- -3'
miRNA:   3'- -GCUGCG--------CuuUGUACGCGUGCGaccug -5'
23785 3' -54.2 NC_005261.1 + 47452 0.66 0.942079
Target:  5'- aGGCGCccGGCccgcuUGCGCGgggGCUGGGCg -3'
miRNA:   3'- gCUGCGcuUUGu----ACGCGUg--CGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 15474 0.66 0.942079
Target:  5'- uCGAcCGCGGcgGACAcGCGCcgcuCGCUgcGGGCg -3'
miRNA:   3'- -GCU-GCGCU--UUGUaCGCGu---GCGA--CCUG- -5'
23785 3' -54.2 NC_005261.1 + 121792 0.66 0.942079
Target:  5'- cCGGCGgGcuGGGCAggggGCGCgugGCUGGGCu -3'
miRNA:   3'- -GCUGCgC--UUUGUa---CGCGug-CGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 132570 0.66 0.942079
Target:  5'- aCGGCuGCGaAGACGUcggcGCGCcCGC-GGACg -3'
miRNA:   3'- -GCUG-CGC-UUUGUA----CGCGuGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 103490 0.66 0.942079
Target:  5'- uGGCGCaAGACGUcgucgGCGC-CGC-GGACg -3'
miRNA:   3'- gCUGCGcUUUGUA-----CGCGuGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 28880 0.66 0.941611
Target:  5'- gCGGCGCGGAcgccgccGCcUGCGCccaACGCggaGGAa -3'
miRNA:   3'- -GCUGCGCUU-------UGuACGCG---UGCGa--CCUg -5'
23785 3' -54.2 NC_005261.1 + 96871 0.66 0.93728
Target:  5'- gGGCGCGGguAGCGUGCGgaucCGCGCcucGGCg -3'
miRNA:   3'- gCUGCGCU--UUGUACGC----GUGCGac-CUG- -5'
23785 3' -54.2 NC_005261.1 + 49443 0.66 0.93728
Target:  5'- -aGCGCG-AGCccGCGCGCGCcgcGGAa -3'
miRNA:   3'- gcUGCGCuUUGuaCGCGUGCGa--CCUg -5'
23785 3' -54.2 NC_005261.1 + 20855 0.66 0.93728
Target:  5'- gCGugGCGGcuCuUGCGC-CGC-GGGCc -3'
miRNA:   3'- -GCugCGCUuuGuACGCGuGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 87488 0.66 0.93728
Target:  5'- uCGGCGCGGc-CGUGCugGCGCGCaGGcGCu -3'
miRNA:   3'- -GCUGCGCUuuGUACG--CGUGCGaCC-UG- -5'
23785 3' -54.2 NC_005261.1 + 74888 0.66 0.93728
Target:  5'- gCGGCgGCGGAGUcgGCGgccCGCGCUGGcCg -3'
miRNA:   3'- -GCUG-CGCUUUGuaCGC---GUGCGACCuG- -5'
23785 3' -54.2 NC_005261.1 + 44200 0.66 0.936291
Target:  5'- gCGAgCGCGAGcuGCAggcggcccgggaGCGCGCGCUGcuGGCc -3'
miRNA:   3'- -GCU-GCGCUU--UGUa-----------CGCGUGCGAC--CUG- -5'
23785 3' -54.2 NC_005261.1 + 14162 0.66 0.932234
Target:  5'- aGcCGCG-AACG-GCGCGCGUcucgGGGCg -3'
miRNA:   3'- gCuGCGCuUUGUaCGCGUGCGa---CCUG- -5'
23785 3' -54.2 NC_005261.1 + 135302 0.66 0.932234
Target:  5'- -cGCGCGAccGGCGUGuCGC-C-CUGGGCg -3'
miRNA:   3'- gcUGCGCU--UUGUAC-GCGuGcGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 75987 0.66 0.932234
Target:  5'- gGGCGCGGcc---GCccuCGCGCUGGACg -3'
miRNA:   3'- gCUGCGCUuuguaCGc--GUGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 86482 0.66 0.932234
Target:  5'- gGACGCGGccgGGCcgGCGCcUGuCUGcGGCa -3'
miRNA:   3'- gCUGCGCU---UUGuaCGCGuGC-GAC-CUG- -5'
23785 3' -54.2 NC_005261.1 + 14456 0.66 0.932234
Target:  5'- gGGCGCGcgGCGgaGCuCGCGCUGGuCc -3'
miRNA:   3'- gCUGCGCuuUGUa-CGcGUGCGACCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.