miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23785 3' -54.2 NC_005261.1 + 99340 0.66 0.932234
Target:  5'- cCGGCGCGcccAGCAgcagcGCGCACGU--GACg -3'
miRNA:   3'- -GCUGCGCu--UUGUa----CGCGUGCGacCUG- -5'
23785 3' -54.2 NC_005261.1 + 135302 0.66 0.932234
Target:  5'- -cGCGCGAccGGCGUGuCGC-C-CUGGGCg -3'
miRNA:   3'- gcUGCGCU--UUGUAC-GCGuGcGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 92744 0.66 0.932234
Target:  5'- gGACaGCGAGcgccGCccGCGC-CGCUcGGACc -3'
miRNA:   3'- gCUG-CGCUU----UGuaCGCGuGCGA-CCUG- -5'
23785 3' -54.2 NC_005261.1 + 2521 0.66 0.929087
Target:  5'- gCGACcuCGggGCGgcaguaggccgccaGCGCcgcgGCGCUGGGCg -3'
miRNA:   3'- -GCUGc-GCuuUGUa-------------CGCG----UGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 74675 0.66 0.92694
Target:  5'- gGACGCGGAcGCGaccGCGCGggaGCUGGcCg -3'
miRNA:   3'- gCUGCGCUU-UGUa--CGCGUg--CGACCuG- -5'
23785 3' -54.2 NC_005261.1 + 30186 0.66 0.92694
Target:  5'- -cGCGcCGAGGCGgccGC-CGCGCUGGAg -3'
miRNA:   3'- gcUGC-GCUUUGUa--CGcGUGCGACCUg -5'
23785 3' -54.2 NC_005261.1 + 102486 0.66 0.92694
Target:  5'- uCGGCGCGccGCc-GCGCcaGCGCcUGGGCc -3'
miRNA:   3'- -GCUGCGCuuUGuaCGCG--UGCG-ACCUG- -5'
23785 3' -54.2 NC_005261.1 + 76077 0.66 0.92694
Target:  5'- gGGCGgGcuGC-UGCGCcucgugGCGCUGGAg -3'
miRNA:   3'- gCUGCgCuuUGuACGCG------UGCGACCUg -5'
23785 3' -54.2 NC_005261.1 + 54258 0.66 0.92694
Target:  5'- -aGCGCGcccuGGCGccGCGCACaCUGGACc -3'
miRNA:   3'- gcUGCGCu---UUGUa-CGCGUGcGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 129568 0.66 0.926397
Target:  5'- gGGCGUagaggagGAGGCGgccGCGCGCcGCgGGACa -3'
miRNA:   3'- gCUGCG-------CUUUGUa--CGCGUG-CGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 77662 0.67 0.921398
Target:  5'- cCGGCGCcu-GCAgGCGCaggGCGC-GGACg -3'
miRNA:   3'- -GCUGCGcuuUGUaCGCG---UGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 100724 0.67 0.921398
Target:  5'- gCGGcCGCGccGCGcGCGCGCGCgGcGGCg -3'
miRNA:   3'- -GCU-GCGCuuUGUaCGCGUGCGaC-CUG- -5'
23785 3' -54.2 NC_005261.1 + 38913 0.67 0.921398
Target:  5'- cCGGCGCGcGGGCccGCGCGCcaagccggcgGCcGGGCg -3'
miRNA:   3'- -GCUGCGC-UUUGuaCGCGUG----------CGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 29567 0.67 0.921398
Target:  5'- uGGCGCGccugcuGCAgcgGCGCGUGCaGGGCu -3'
miRNA:   3'- gCUGCGCuu----UGUa--CGCGUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 68740 0.67 0.921398
Target:  5'- cCGGCGgGAAGaa-GCGCcCGCcgGGGCg -3'
miRNA:   3'- -GCUGCgCUUUguaCGCGuGCGa-CCUG- -5'
23785 3' -54.2 NC_005261.1 + 60084 0.67 0.921398
Target:  5'- gGGCuGCGuGGGCA-GCaGCACGCUGGcCa -3'
miRNA:   3'- gCUG-CGC-UUUGUaCG-CGUGCGACCuG- -5'
23785 3' -54.2 NC_005261.1 + 1826 0.67 0.915608
Target:  5'- -cGCGCGuAAGCGgccucgGCGCGCGCgaaGGCg -3'
miRNA:   3'- gcUGCGC-UUUGUa-----CGCGUGCGac-CUG- -5'
23785 3' -54.2 NC_005261.1 + 45624 0.67 0.915608
Target:  5'- gCGGCGCGgcGCGgcggGCcCGCGCcGGAg -3'
miRNA:   3'- -GCUGCGCuuUGUa---CGcGUGCGaCCUg -5'
23785 3' -54.2 NC_005261.1 + 117934 0.67 0.915608
Target:  5'- cCGGCuGCGGccCGUGCGCGCucgcuGCUacGGGCg -3'
miRNA:   3'- -GCUG-CGCUuuGUACGCGUG-----CGA--CCUG- -5'
23785 3' -54.2 NC_005261.1 + 112910 0.67 0.915608
Target:  5'- uGcCGCGcuGCGUGCGCGaggGCgaGGGCg -3'
miRNA:   3'- gCuGCGCuuUGUACGCGUg--CGa-CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.