miRNA display CGI


Results 1 - 20 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23785 3' -54.2 NC_005261.1 + 61 0.77 0.388256
Target:  5'- gGGC-CGAAAUcgGCGCGCGCggGGGCg -3'
miRNA:   3'- gCUGcGCUUUGuaCGCGUGCGa-CCUG- -5'
23785 3' -54.2 NC_005261.1 + 1754 0.68 0.875774
Target:  5'- aGGCGCGugGCcaccguguaGCGCACGUUGG-Cg -3'
miRNA:   3'- gCUGCGCuuUGua-------CGCGUGCGACCuG- -5'
23785 3' -54.2 NC_005261.1 + 1826 0.67 0.915608
Target:  5'- -cGCGCGuAAGCGgccucgGCGCGCGCgaaGGCg -3'
miRNA:   3'- gcUGCGC-UUUGUa-----CGCGUGCGac-CUG- -5'
23785 3' -54.2 NC_005261.1 + 1922 0.68 0.875774
Target:  5'- -cGCGCGgcGCAcUGCGC-CGC-GGGCa -3'
miRNA:   3'- gcUGCGCuuUGU-ACGCGuGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 2521 0.66 0.929087
Target:  5'- gCGACcuCGggGCGgcaguaggccgccaGCGCcgcgGCGCUGGGCg -3'
miRNA:   3'- -GCUGc-GCuuUGUa-------------CGCG----UGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 3882 0.67 0.90329
Target:  5'- aCGGCGCGcagcucGGCGaGCGCGgCGC-GGGCg -3'
miRNA:   3'- -GCUGCGCu-----UUGUaCGCGU-GCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 5733 0.69 0.819192
Target:  5'- cCGGCGgGAGAa--GCGCGCGC-GGAa -3'
miRNA:   3'- -GCUGCgCUUUguaCGCGUGCGaCCUg -5'
23785 3' -54.2 NC_005261.1 + 12313 0.72 0.673065
Target:  5'- gGGCGCGuagccGGCggGCGCGCGCUuGGCc -3'
miRNA:   3'- gCUGCGCu----UUGuaCGCGUGCGAcCUG- -5'
23785 3' -54.2 NC_005261.1 + 13045 0.75 0.518478
Target:  5'- gGGCGCGggGCc-GCGCGCGCcccugccGGGCg -3'
miRNA:   3'- gCUGCGCuuUGuaCGCGUGCGa------CCUG- -5'
23785 3' -54.2 NC_005261.1 + 13341 0.69 0.844655
Target:  5'- -cGCGCGGccAGCGgucgGCGgAgGCUGGGCg -3'
miRNA:   3'- gcUGCGCU--UUGUa---CGCgUgCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 13678 0.77 0.414364
Target:  5'- gGGCGCGggGCGcGCGgGCGUgGGGCg -3'
miRNA:   3'- gCUGCGCuuUGUaCGCgUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 14162 0.66 0.932234
Target:  5'- aGcCGCG-AACG-GCGCGCGUcucgGGGCg -3'
miRNA:   3'- gCuGCGCuUUGUaCGCGUGCGa---CCUG- -5'
23785 3' -54.2 NC_005261.1 + 14456 0.66 0.932234
Target:  5'- gGGCGCGcgGCGgaGCuCGCGCUGGuCc -3'
miRNA:   3'- gCUGCGCuuUGUa-CGcGUGCGACCuG- -5'
23785 3' -54.2 NC_005261.1 + 14947 0.68 0.890003
Target:  5'- uGGCGCugGAAGCGaGCGgGCGUgccugGGGCg -3'
miRNA:   3'- gCUGCG--CUUUGUaCGCgUGCGa----CCUG- -5'
23785 3' -54.2 NC_005261.1 + 15474 0.66 0.942079
Target:  5'- uCGAcCGCGGcgGACAcGCGCcgcuCGCUgcGGGCg -3'
miRNA:   3'- -GCU-GCGCU--UUGUaCGCGu---GCGA--CCUG- -5'
23785 3' -54.2 NC_005261.1 + 17502 0.76 0.460179
Target:  5'- aGACGCGGAGCAUGggcuCGUACGCaGGGu -3'
miRNA:   3'- gCUGCGCUUUGUAC----GCGUGCGaCCUg -5'
23785 3' -54.2 NC_005261.1 + 19081 0.68 0.868319
Target:  5'- uCGGCGCGu-GCuUGCGUgGCGUUGGAa -3'
miRNA:   3'- -GCUGCGCuuUGuACGCG-UGCGACCUg -5'
23785 3' -54.2 NC_005261.1 + 19254 0.73 0.600204
Target:  5'- gGGCGCuGAACA-GCGCGCGCgGGuACg -3'
miRNA:   3'- gCUGCGcUUUGUaCGCGUGCGaCC-UG- -5'
23785 3' -54.2 NC_005261.1 + 20855 0.66 0.93728
Target:  5'- gCGugGCGGcuCuUGCGC-CGC-GGGCc -3'
miRNA:   3'- -GCugCGCUuuGuACGCGuGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 21189 0.71 0.734261
Target:  5'- uGGCGCGAGcGCGgccGCGgACGCUGGcCc -3'
miRNA:   3'- gCUGCGCUU-UGUa--CGCgUGCGACCuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.