miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23785 3' -54.2 NC_005261.1 + 22586 0.74 0.538571
Target:  5'- gCGGCG-GAGGCG-GCGCACGCUGccGGCg -3'
miRNA:   3'- -GCUGCgCUUUGUaCGCGUGCGAC--CUG- -5'
23785 3' -54.2 NC_005261.1 + 22745 0.74 0.569181
Target:  5'- gGGCGCGggGCGgcgGCGgccCACGCgucuggGGGCg -3'
miRNA:   3'- gCUGCGCuuUGUa--CGC---GUGCGa-----CCUG- -5'
23785 3' -54.2 NC_005261.1 + 23183 0.66 0.932234
Target:  5'- gGGgGCGAcAGCGaGCGCGcCGCgGGGCc -3'
miRNA:   3'- gCUgCGCU-UUGUaCGCGU-GCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 23476 0.66 0.946634
Target:  5'- gCGGCgGCGA---GUGCGCGggccCGCcUGGGCa -3'
miRNA:   3'- -GCUG-CGCUuugUACGCGU----GCG-ACCUG- -5'
23785 3' -54.2 NC_005261.1 + 24684 0.69 0.819192
Target:  5'- gGACGgGggGCggGUGCAUGCaaaucGGGCc -3'
miRNA:   3'- gCUGCgCuuUGuaCGCGUGCGa----CCUG- -5'
23785 3' -54.2 NC_005261.1 + 27358 0.71 0.734261
Target:  5'- gCGGCGCcGGACcgGCGCGaggcCGgUGGGCa -3'
miRNA:   3'- -GCUGCGcUUUGuaCGCGU----GCgACCUG- -5'
23785 3' -54.2 NC_005261.1 + 28880 0.66 0.941611
Target:  5'- gCGGCGCGGAcgccgccGCcUGCGCccaACGCggaGGAa -3'
miRNA:   3'- -GCUGCGCUU-------UGuACGCG---UGCGa--CCUg -5'
23785 3' -54.2 NC_005261.1 + 29199 0.69 0.827868
Target:  5'- gCGGCGCccgcGCggGCGCGCGaCUGGGg -3'
miRNA:   3'- -GCUGCGcuu-UGuaCGCGUGC-GACCUg -5'
23785 3' -54.2 NC_005261.1 + 29463 0.7 0.782815
Target:  5'- gGACGCGGggaAGCAguacgcgGCGCugG-UGGACc -3'
miRNA:   3'- gCUGCGCU---UUGUa------CGCGugCgACCUG- -5'
23785 3' -54.2 NC_005261.1 + 29567 0.67 0.921398
Target:  5'- uGGCGCGccugcuGCAgcgGCGCGUGCaGGGCu -3'
miRNA:   3'- gCUGCGCuu----UGUa--CGCGUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 29912 0.66 0.946634
Target:  5'- -cGCGCGAGcgGC-UGCGCGaGCUGG-Cg -3'
miRNA:   3'- gcUGCGCUU--UGuACGCGUgCGACCuG- -5'
23785 3' -54.2 NC_005261.1 + 30186 0.66 0.92694
Target:  5'- -cGCGcCGAGGCGgccGC-CGCGCUGGAg -3'
miRNA:   3'- gcUGC-GCUUUGUa--CGcGUGCGACCUg -5'
23785 3' -54.2 NC_005261.1 + 30225 0.69 0.819192
Target:  5'- gCGGCGCGAAcCGUG-GCccCGCUGGcGCg -3'
miRNA:   3'- -GCUGCGCUUuGUACgCGu-GCGACC-UG- -5'
23785 3' -54.2 NC_005261.1 + 30265 0.74 0.579485
Target:  5'- gCGGCGCGGcGGCccGCGCGCccgcCUGGACg -3'
miRNA:   3'- -GCUGCGCU-UUGuaCGCGUGc---GACCUG- -5'
23785 3' -54.2 NC_005261.1 + 30387 0.69 0.810341
Target:  5'- gCGGCGCGGguggagguggagGACAUGCGgGC-CgGGGCa -3'
miRNA:   3'- -GCUGCGCU------------UUGUACGCgUGcGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 31579 0.72 0.662689
Target:  5'- gGGCGCGccGGACGUGaGCGCGCUcGGCg -3'
miRNA:   3'- gCUGCGC--UUUGUACgCGUGCGAcCUG- -5'
23785 3' -54.2 NC_005261.1 + 31810 0.71 0.713112
Target:  5'- -cGCGCGcuggccuGAGCG-GCGCGCGCUGGcGCg -3'
miRNA:   3'- gcUGCGC-------UUUGUaCGCGUGCGACC-UG- -5'
23785 3' -54.2 NC_005261.1 + 31946 0.7 0.78936
Target:  5'- gCGGCGCc-AACGUGCGCuacacgguggccacGCGCcUGGGCc -3'
miRNA:   3'- -GCUGCGcuUUGUACGCG--------------UGCG-ACCUG- -5'
23785 3' -54.2 NC_005261.1 + 32180 0.71 0.714127
Target:  5'- uGGCcuGCG-GGCG-GCGCGCGCUGGAg -3'
miRNA:   3'- gCUG--CGCuUUGUaCGCGUGCGACCUg -5'
23785 3' -54.2 NC_005261.1 + 32550 0.73 0.589829
Target:  5'- gCGGCGCG-GGCcgGCGCGCG-UGGAa -3'
miRNA:   3'- -GCUGCGCuUUGuaCGCGUGCgACCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.