miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23785 3' -54.2 NC_005261.1 + 137744 0.77 0.388256
Target:  5'- gGGC-CGAAAUcgGCGCGCGCggGGGCg -3'
miRNA:   3'- gCUGcGCUUUGuaCGCGUGCGa-CCUG- -5'
23785 3' -54.2 NC_005261.1 + 136607 0.73 0.610603
Target:  5'- -aGCGUGGAGCGgcGCGCGCGCgccgaGGGCg -3'
miRNA:   3'- gcUGCGCUUUGUa-CGCGUGCGa----CCUG- -5'
23785 3' -54.2 NC_005261.1 + 136572 0.68 0.883004
Target:  5'- aGGCGCGGGugG-GCGgGCGCaGaGACg -3'
miRNA:   3'- gCUGCGCUUugUaCGCgUGCGaC-CUG- -5'
23785 3' -54.2 NC_005261.1 + 135302 0.66 0.932234
Target:  5'- -cGCGCGAccGGCGUGuCGC-C-CUGGGCg -3'
miRNA:   3'- gcUGCGCU--UUGUAC-GCGuGcGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 134902 0.73 0.589829
Target:  5'- gGugGUGGAGCggGUGCGCAagcgcaaGCUGGAg -3'
miRNA:   3'- gCugCGCUUUG--UACGCGUg------CGACCUg -5'
23785 3' -54.2 NC_005261.1 + 134538 0.73 0.62102
Target:  5'- gGGCGCGcAGACGUGacCGCcccuUGCUGGGCg -3'
miRNA:   3'- gCUGCGC-UUUGUAC--GCGu---GCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 134365 0.67 0.915608
Target:  5'- -cGCGCGggGgGcgGCGC-CGCUGG-Cg -3'
miRNA:   3'- gcUGCGCuuUgUa-CGCGuGCGACCuG- -5'
23785 3' -54.2 NC_005261.1 + 133736 0.66 0.946634
Target:  5'- gCGGCGCGGAcaACGccaCGCGCGCgaucGACg -3'
miRNA:   3'- -GCUGCGCUU--UGUac-GCGUGCGac--CUG- -5'
23785 3' -54.2 NC_005261.1 + 132570 0.66 0.942079
Target:  5'- aCGGCuGCGaAGACGUcggcGCGCcCGC-GGACg -3'
miRNA:   3'- -GCUG-CGC-UUUGUA----CGCGuGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 131901 0.73 0.589829
Target:  5'- aCGGCGCGcacccgcuGGACGggcuuuuugGCGCGCGCgGGACc -3'
miRNA:   3'- -GCUGCGC--------UUUGUa--------CGCGUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 131766 0.79 0.331689
Target:  5'- cCGGCGCG--GCggGCGCGcCGCUGGGCc -3'
miRNA:   3'- -GCUGCGCuuUGuaCGCGU-GCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 131724 0.71 0.754027
Target:  5'- gCGGCGCGcuucgguGgGUGCuGCACGC-GGACg -3'
miRNA:   3'- -GCUGCGCuu-----UgUACG-CGUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 131678 0.67 0.909571
Target:  5'- gGGUGCGAccGCccUGCGCgcgGCGCUGGACc -3'
miRNA:   3'- gCUGCGCUu-UGu-ACGCG---UGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 131494 0.66 0.942079
Target:  5'- uCGACGCcuucuuccGgcACGUGCGCGCGCa---- -3'
miRNA:   3'- -GCUGCG--------CuuUGUACGCGUGCGaccug -5'
23785 3' -54.2 NC_005261.1 + 130635 0.7 0.773347
Target:  5'- -cGCGCGggGCGcGCGUGCGCUcgccGACg -3'
miRNA:   3'- gcUGCGCuuUGUaCGCGUGCGAc---CUG- -5'
23785 3' -54.2 NC_005261.1 + 130490 0.68 0.890003
Target:  5'- uCGGCgGCGAgggccccgacGACGUgGCGCagGCGCUGGcCg -3'
miRNA:   3'- -GCUG-CGCU----------UUGUA-CGCG--UGCGACCuG- -5'
23785 3' -54.2 NC_005261.1 + 129968 0.66 0.950946
Target:  5'- gGGCgGCcAGGCAagugucGCGCauGCGCUGGGCg -3'
miRNA:   3'- gCUG-CGcUUUGUa-----CGCG--UGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 129568 0.66 0.926397
Target:  5'- gGGCGUagaggagGAGGCGgccGCGCGCcGCgGGACa -3'
miRNA:   3'- gCUGCG-------CUUUGUa--CGCGUG-CGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 127634 0.7 0.773347
Target:  5'- gGACGCGAcGGCGgcgGCGC-CGggGGGCg -3'
miRNA:   3'- gCUGCGCU-UUGUa--CGCGuGCgaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 127339 0.67 0.896766
Target:  5'- gGGC-CGGAGCG-GCgGgGCGCUGGGCc -3'
miRNA:   3'- gCUGcGCUUUGUaCG-CgUGCGACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.