miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23785 3' -54.2 NC_005261.1 + 115921 0.66 0.950946
Target:  5'- cCGGC-CGccGCGUcCGCGCGCgGGGCa -3'
miRNA:   3'- -GCUGcGCuuUGUAcGCGUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 69531 0.77 0.396838
Target:  5'- uGGCGCGGGcGCuggcGCGCGCGCUGGGg -3'
miRNA:   3'- gCUGCGCUU-UGua--CGCGUGCGACCUg -5'
23785 3' -54.2 NC_005261.1 + 65359 0.77 0.414364
Target:  5'- uGACGCGggGCAUGgccCGCACGCccGGCa -3'
miRNA:   3'- gCUGCGCuuUGUAC---GCGUGCGacCUG- -5'
23785 3' -54.2 NC_005261.1 + 13678 0.77 0.414364
Target:  5'- gGGCGCGggGCGcGCGgGCGUgGGGCg -3'
miRNA:   3'- gCUGCGCuuUGUaCGCgUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 76462 0.77 0.414364
Target:  5'- gCGACgGCGgcGCcgGCGCGCGCgcGGACc -3'
miRNA:   3'- -GCUG-CGCuuUGuaCGCGUGCGa-CCUG- -5'
23785 3' -54.2 NC_005261.1 + 69199 0.76 0.454538
Target:  5'- gGACGCGGccAACGacguccuccgggagcUGUGCGCGCUGGGg -3'
miRNA:   3'- gCUGCGCU--UUGU---------------ACGCGUGCGACCUg -5'
23785 3' -54.2 NC_005261.1 + 17502 0.76 0.460179
Target:  5'- aGACGCGGAGCAUGggcuCGUACGCaGGGu -3'
miRNA:   3'- gCUGCGCUUUGUAC----GCGUGCGaCCUg -5'
23785 3' -54.2 NC_005261.1 + 67101 0.76 0.460179
Target:  5'- gCGACGCGguGCGggcgGCGCGCGCagUGcGGCg -3'
miRNA:   3'- -GCUGCGCuuUGUa---CGCGUGCG--AC-CUG- -5'
23785 3' -54.2 NC_005261.1 + 114272 0.76 0.479245
Target:  5'- aCGACGCGGug---GCGCGCGC-GGGCu -3'
miRNA:   3'- -GCUGCGCUuuguaCGCGUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 75610 0.77 0.396838
Target:  5'- gGACGCGGAcgGCGUcGCGUACG-UGGACg -3'
miRNA:   3'- gCUGCGCUU--UGUA-CGCGUGCgACCUG- -5'
23785 3' -54.2 NC_005261.1 + 137744 0.77 0.388256
Target:  5'- gGGC-CGAAAUcgGCGCGCGCggGGGCg -3'
miRNA:   3'- gCUGcGCUUUGuaCGCGUGCGa-CCUG- -5'
23785 3' -54.2 NC_005261.1 + 61 0.77 0.388256
Target:  5'- gGGC-CGAAAUcgGCGCGCGCggGGGCg -3'
miRNA:   3'- gCUGcGCUUUGuaCGCGUGCGa-CCUG- -5'
23785 3' -54.2 NC_005261.1 + 69357 0.85 0.142507
Target:  5'- aCGACGCGGc-CGcGCGCGCGCUGGACc -3'
miRNA:   3'- -GCUGCGCUuuGUaCGCGUGCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 36636 0.82 0.220353
Target:  5'- aCGGCGCGAAGCcgGCGCGCGggcuugGGGCc -3'
miRNA:   3'- -GCUGCGCUUUGuaCGCGUGCga----CCUG- -5'
23785 3' -54.2 NC_005261.1 + 83656 0.81 0.243306
Target:  5'- gCGGCGUGAGGCGgacGCGCGC-CUGGGCg -3'
miRNA:   3'- -GCUGCGCUUUGUa--CGCGUGcGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 115342 0.79 0.32412
Target:  5'- gGACGUGuacuuCAUGCGCACGCUGuGCg -3'
miRNA:   3'- gCUGCGCuuu--GUACGCGUGCGACcUG- -5'
23785 3' -54.2 NC_005261.1 + 131766 0.79 0.331689
Target:  5'- cCGGCGCG--GCggGCGCGcCGCUGGGCc -3'
miRNA:   3'- -GCUGCGCuuUGuaCGCGU-GCGACCUG- -5'
23785 3' -54.2 NC_005261.1 + 122635 0.78 0.363252
Target:  5'- gCGAgCGCGAGGCccgGCGCGCGUacgUGGGCg -3'
miRNA:   3'- -GCU-GCGCUUUGua-CGCGUGCG---ACCUG- -5'
23785 3' -54.2 NC_005261.1 + 38520 0.78 0.371462
Target:  5'- aGGCGCGcgcuGGC-UGCGCGCGCcGGGCa -3'
miRNA:   3'- gCUGCGCu---UUGuACGCGUGCGaCCUG- -5'
23785 3' -54.2 NC_005261.1 + 80085 0.78 0.383165
Target:  5'- gGACGCG-GACcgGCGCGCGCgccgcgguaccggcuUGGGCg -3'
miRNA:   3'- gCUGCGCuUUGuaCGCGUGCG---------------ACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.