miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23785 5' -56.3 NC_005261.1 + 277 0.66 0.887722
Target:  5'- -gGCUGCGGCGgcgGCUGcgGc-GGCGg -3'
miRNA:   3'- cgUGGUGCCGCa--CGACuaCuaCCGCa -5'
23785 5' -56.3 NC_005261.1 + 253 0.66 0.887722
Target:  5'- -gGCUGCGGCGgcgGCUGcgGc-GGCGg -3'
miRNA:   3'- cgUGGUGCCGCa--CGACuaCuaCCGCa -5'
23785 5' -56.3 NC_005261.1 + 137984 0.66 0.887722
Target:  5'- -gGCUGCGGCGgcgGCUGcgGc-GGCGg -3'
miRNA:   3'- cgUGGUGCCGCa--CGACuaCuaCCGCa -5'
23785 5' -56.3 NC_005261.1 + 120615 0.66 0.887722
Target:  5'- gGCGCCGUGGgGcuccUGCUGGUGgcGGCc- -3'
miRNA:   3'- -CGUGGUGCCgC----ACGACUACuaCCGca -5'
23785 5' -56.3 NC_005261.1 + 137936 0.66 0.887722
Target:  5'- -gGCUGCGGCGgcgGCUGcgGc-GGCGg -3'
miRNA:   3'- cgUGGUGCCGCa--CGACuaCuaCCGCa -5'
23785 5' -56.3 NC_005261.1 + 28607 0.66 0.887722
Target:  5'- cGCGCCGagcUGGCGgaGCUGuggcgcAUGGUGGCc- -3'
miRNA:   3'- -CGUGGU---GCCGCa-CGAC------UACUACCGca -5'
23785 5' -56.3 NC_005261.1 + 137960 0.66 0.887722
Target:  5'- -gGCUGCGGCGgcgGCUGcgGc-GGCGg -3'
miRNA:   3'- cgUGGUGCCGCa--CGACuaCuaCCGCa -5'
23785 5' -56.3 NC_005261.1 + 301 0.66 0.887722
Target:  5'- -gGCUGCGGCGgcgGCUGcgGc-GGCGg -3'
miRNA:   3'- cgUGGUGCCGCa--CGACuaCuaCCGCa -5'
23785 5' -56.3 NC_005261.1 + 136545 0.66 0.880729
Target:  5'- aGC-CCuCGGCcaGCUGGUGggGGCa- -3'
miRNA:   3'- -CGuGGuGCCGcaCGACUACuaCCGca -5'
23785 5' -56.3 NC_005261.1 + 31604 0.66 0.880729
Target:  5'- gGCGCgCAgGGCGUGCUGcUGcucGCGa -3'
miRNA:   3'- -CGUG-GUgCCGCACGACuACuacCGCa -5'
23785 5' -56.3 NC_005261.1 + 63702 0.66 0.873511
Target:  5'- gGUuCUGCGGCGUGUUGcccagguccGUGAgcGGCGUg -3'
miRNA:   3'- -CGuGGUGCCGCACGAC---------UACUa-CCGCA- -5'
23785 5' -56.3 NC_005261.1 + 5561 0.66 0.873511
Target:  5'- gGCGCCcgaGCGGCGga--GAUGggGGCGc -3'
miRNA:   3'- -CGUGG---UGCCGCacgaCUACuaCCGCa -5'
23785 5' -56.3 NC_005261.1 + 79088 0.66 0.873511
Target:  5'- aGCGCCuucAUGGgGuUGCUGcgGA-GGCGg -3'
miRNA:   3'- -CGUGG---UGCCgC-ACGACuaCUaCCGCa -5'
23785 5' -56.3 NC_005261.1 + 135589 0.66 0.872777
Target:  5'- -gGCCACGGCcggcgccGUGCUGGagaaccugcggcUGAagcUGGCGc -3'
miRNA:   3'- cgUGGUGCCG-------CACGACU------------ACU---ACCGCa -5'
23785 5' -56.3 NC_005261.1 + 33776 0.66 0.866074
Target:  5'- gGC-CCGCGGCGagcGCUGGgccccgcGcgGGCGg -3'
miRNA:   3'- -CGuGGUGCCGCa--CGACUa------CuaCCGCa -5'
23785 5' -56.3 NC_005261.1 + 19068 0.66 0.866074
Target:  5'- gGCugCGCGGCucucggcgcGUGCU--UGcGUGGCGUu -3'
miRNA:   3'- -CGugGUGCCG---------CACGAcuAC-UACCGCA- -5'
23785 5' -56.3 NC_005261.1 + 4484 0.66 0.866074
Target:  5'- gGCGCCGCGGCGUaGcCUGc-GcgGGCc- -3'
miRNA:   3'- -CGUGGUGCCGCA-C-GACuaCuaCCGca -5'
23785 5' -56.3 NC_005261.1 + 76437 0.66 0.858423
Target:  5'- gGCGCCAUGGCGgacGCgcccGAcGGCGa -3'
miRNA:   3'- -CGUGGUGCCGCa--CGacuaCUaCCGCa -5'
23785 5' -56.3 NC_005261.1 + 90125 0.66 0.858423
Target:  5'- gGC-CCGCGGCGaggGCgagGAgGggGGCGa -3'
miRNA:   3'- -CGuGGUGCCGCa--CGa--CUaCuaCCGCa -5'
23785 5' -56.3 NC_005261.1 + 101467 0.66 0.858423
Target:  5'- aGCGCCGcCGGCG-GCggcGUGAUGcGCa- -3'
miRNA:   3'- -CGUGGU-GCCGCaCGac-UACUAC-CGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.