miRNA display CGI


Results 1 - 20 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23786 3' -61.1 NC_005261.1 + 129723 0.66 0.70915
Target:  5'- -cCGCCGGCugcagcggcagGGCGGCGGGgccCGGccuucaGCa -3'
miRNA:   3'- auGCGGCCG-----------CUGCCGCUCa--GCCug----CG- -5'
23786 3' -61.1 NC_005261.1 + 68674 0.66 0.70915
Target:  5'- -cCGCCGGCGuccgccGCGuGgGGGcCGG-CGCg -3'
miRNA:   3'- auGCGGCCGC------UGC-CgCUCaGCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 1576 0.66 0.70915
Target:  5'- cGCGCCGaGCccccagcgguuGGCGGCG---CGGugGCu -3'
miRNA:   3'- aUGCGGC-CG-----------CUGCCGCucaGCCugCG- -5'
23786 3' -61.1 NC_005261.1 + 66683 0.66 0.70915
Target:  5'- aGCGCCucGGCGGCGauCGAGaaGGcCGCg -3'
miRNA:   3'- aUGCGG--CCGCUGCc-GCUCagCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 62822 0.66 0.70915
Target:  5'- -uCGCCGcGCGGggcacCGGCGGGggaCuGGCGCg -3'
miRNA:   3'- auGCGGC-CGCU-----GCCGCUCa--GcCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 131189 0.66 0.70915
Target:  5'- cUACGCCcGCGGC-GCG-GUCGccgccGGCGCg -3'
miRNA:   3'- -AUGCGGcCGCUGcCGCuCAGC-----CUGCG- -5'
23786 3' -61.1 NC_005261.1 + 121492 0.66 0.70915
Target:  5'- -cCGCCacGG-GGCGGCGGGgCGGGCa- -3'
miRNA:   3'- auGCGG--CCgCUGCCGCUCaGCCUGcg -5'
23786 3' -61.1 NC_005261.1 + 29411 0.66 0.70915
Target:  5'- cGCGCuacgCGGCGGCcGCGGGgcccgCGGcCGUg -3'
miRNA:   3'- aUGCG----GCCGCUGcCGCUCa----GCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 98142 0.66 0.70915
Target:  5'- gGCgGCCGuCGGCGGCaAGgccgCGGGCGg -3'
miRNA:   3'- aUG-CGGCcGCUGCCGcUCa---GCCUGCg -5'
23786 3' -61.1 NC_005261.1 + 94622 0.66 0.70915
Target:  5'- -uCGCCGcCGcCGGCGccgucGUCGGcGCGCg -3'
miRNA:   3'- auGCGGCcGCuGCCGCu----CAGCC-UGCG- -5'
23786 3' -61.1 NC_005261.1 + 94908 0.66 0.70915
Target:  5'- cGCGCUGGa---GGCGAGgaaGGAgCGCu -3'
miRNA:   3'- aUGCGGCCgcugCCGCUCag-CCU-GCG- -5'
23786 3' -61.1 NC_005261.1 + 98248 0.66 0.70915
Target:  5'- cGCGgcCCGGUG-CGGCGcGUCaGGcgGCGCg -3'
miRNA:   3'- aUGC--GGCCGCuGCCGCuCAG-CC--UGCG- -5'
23786 3' -61.1 NC_005261.1 + 136556 0.66 0.708187
Target:  5'- --aGCUGGUGGgGGCagaaggcgcggguGGG-CGGGCGCa -3'
miRNA:   3'- augCGGCCGCUgCCG-------------CUCaGCCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 37199 0.66 0.706259
Target:  5'- cGCuGCUGGCGGCGcuacuguggcucccGCGGGcuugCGcGGCGCg -3'
miRNA:   3'- aUG-CGGCCGCUGC--------------CGCUCa---GC-CUGCG- -5'
23786 3' -61.1 NC_005261.1 + 48341 0.66 0.706259
Target:  5'- cGCGCgCGGCGA-GGcCGAGgagccggcuccacuUCGGgagGCGCa -3'
miRNA:   3'- aUGCG-GCCGCUgCC-GCUC--------------AGCC---UGCG- -5'
23786 3' -61.1 NC_005261.1 + 50836 0.66 0.703363
Target:  5'- gGCGCC-GCGAgcUGGCGccuguggcucgcccaGGUCGG-CGCc -3'
miRNA:   3'- aUGCGGcCGCU--GCCGC---------------UCAGCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 1777 0.66 0.699494
Target:  5'- cACGuuGGCGccGCGGCaGAGccgcagCGGcgGCGCc -3'
miRNA:   3'- aUGCggCCGC--UGCCG-CUCa-----GCC--UGCG- -5'
23786 3' -61.1 NC_005261.1 + 31687 0.66 0.699494
Target:  5'- gGCG-CGGCGGCGGCuGA-UCGugaucGACGCc -3'
miRNA:   3'- aUGCgGCCGCUGCCG-CUcAGC-----CUGCG- -5'
23786 3' -61.1 NC_005261.1 + 136481 0.66 0.699494
Target:  5'- cGCGCgGGCaGCaGCGAGcagcUCGG-CGCc -3'
miRNA:   3'- aUGCGgCCGcUGcCGCUC----AGCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 119905 0.66 0.699494
Target:  5'- gGCGCC-GCGACgcgGGCGccaAGUCGcaGCGCa -3'
miRNA:   3'- aUGCGGcCGCUG---CCGC---UCAGCc-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.