miRNA display CGI


Results 1 - 20 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23786 3' -61.1 NC_005261.1 + 29411 0.66 0.70915
Target:  5'- cGCGCuacgCGGCGGCcGCGGGgcccgCGGcCGUg -3'
miRNA:   3'- aUGCG----GCCGCUGcCGCUCa----GCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 14833 0.66 0.673182
Target:  5'- aUGCGCCgggagcacggcagcaGGCGGCGGCGcaucgcgcAGuucgccaUCGcGGCGCa -3'
miRNA:   3'- -AUGCGG---------------CCGCUGCCGC--------UC-------AGC-CUGCG- -5'
23786 3' -61.1 NC_005261.1 + 32219 0.66 0.680032
Target:  5'- aGCuGCCGGCcGCGGCG-GUggccuucugcgCGGcCGCg -3'
miRNA:   3'- aUG-CGGCCGcUGCCGCuCA-----------GCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 52874 0.66 0.664353
Target:  5'- aGCGcCCGaGUGAgCGGCGGGUCGuuaaauagccacacGCGCg -3'
miRNA:   3'- aUGC-GGC-CGCU-GCCGCUCAGCc-------------UGCG- -5'
23786 3' -61.1 NC_005261.1 + 15542 0.66 0.660423
Target:  5'- gGCGUCGuucGCGACGcGCGGG-CaGGAgGCg -3'
miRNA:   3'- aUGCGGC---CGCUGC-CGCUCaG-CCUgCG- -5'
23786 3' -61.1 NC_005261.1 + 133057 0.66 0.65944
Target:  5'- cUGCG-CGGCGuugGCGGCGAGuacgucagcuucuUCGaGCGCa -3'
miRNA:   3'- -AUGCgGCCGC---UGCCGCUC-------------AGCcUGCG- -5'
23786 3' -61.1 NC_005261.1 + 15706 0.66 0.670242
Target:  5'- uUGCGUCGGCugggugGACGGCGAa-CGcGACGg -3'
miRNA:   3'- -AUGCGGCCG------CUGCCGCUcaGC-CUGCg -5'
23786 3' -61.1 NC_005261.1 + 71384 0.66 0.674162
Target:  5'- cGCGCC-GCGACccgguacgcgugguaGGCGGcGUCcGGCGCg -3'
miRNA:   3'- aUGCGGcCGCUG---------------CCGCU-CAGcCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 652 0.66 0.660423
Target:  5'- aGCGCCGcgucccCGGCGcCGAGUCcuggcccuccgcGGACGCu -3'
miRNA:   3'- aUGCGGCc-----GCUGCcGCUCAG------------CCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 113556 0.66 0.660423
Target:  5'- cGCGCUGGaCcGCGaGCaguGGUCGGugGCc -3'
miRNA:   3'- aUGCGGCC-GcUGC-CGc--UCAGCCugCG- -5'
23786 3' -61.1 NC_005261.1 + 68060 0.66 0.680032
Target:  5'- cUACGCgGGC-ACGGUGGucUCGGuCGCc -3'
miRNA:   3'- -AUGCGgCCGcUGCCGCUc-AGCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 34377 0.66 0.660423
Target:  5'- gGCGCCGcGCGcagacGCGGCgcagGAGUUuaucgaccgGGugGCg -3'
miRNA:   3'- aUGCGGC-CGC-----UGCCG----CUCAG---------CCugCG- -5'
23786 3' -61.1 NC_005261.1 + 35235 0.66 0.680032
Target:  5'- gAC-CCGGCaggaggagaGGCGGCGGGaUgGGAgGCa -3'
miRNA:   3'- aUGcGGCCG---------CUGCCGCUC-AgCCUgCG- -5'
23786 3' -61.1 NC_005261.1 + 59729 0.66 0.660423
Target:  5'- gGCGgCaGCGGCGGCGcG-CGGcCGCc -3'
miRNA:   3'- aUGCgGcCGCUGCCGCuCaGCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 128879 0.66 0.670242
Target:  5'- gACGacgaGGCGGgGGcCGGGUgGGAgGCg -3'
miRNA:   3'- aUGCgg--CCGCUgCC-GCUCAgCCUgCG- -5'
23786 3' -61.1 NC_005261.1 + 49297 0.66 0.680032
Target:  5'- --aGCCcGCGGCGGUGAG-CGccGCGCa -3'
miRNA:   3'- augCGGcCGCUGCCGCUCaGCc-UGCG- -5'
23786 3' -61.1 NC_005261.1 + 103885 0.66 0.664353
Target:  5'- -cCGCCGGgCGGCGcGCcaagccggGccacccgcgccgccaGGUCGGGCGCg -3'
miRNA:   3'- auGCGGCC-GCUGC-CG--------C---------------UCAGCCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 67162 0.66 0.680032
Target:  5'- cACG-CGGCGGCGGCGucacaCGGccACGUg -3'
miRNA:   3'- aUGCgGCCGCUGCCGCuca--GCC--UGCG- -5'
23786 3' -61.1 NC_005261.1 + 97945 0.66 0.680032
Target:  5'- aGCuCCGGCGGCaaCGAGggaGGugGCg -3'
miRNA:   3'- aUGcGGCCGCUGccGCUCag-CCugCG- -5'
23786 3' -61.1 NC_005261.1 + 96691 0.66 0.677098
Target:  5'- cGCGCagguacuGGCGACccagcaGCGAGUuggcgggcaccaccCGGGCGCg -3'
miRNA:   3'- aUGCGg------CCGCUGc-----CGCUCA--------------GCCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.