miRNA display CGI


Results 1 - 20 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23786 3' -61.1 NC_005261.1 + 63028 0.86 0.04585
Target:  5'- gGCGCCGGCGcccGCGGCGAGgCGGuCGCg -3'
miRNA:   3'- aUGCGGCCGC---UGCCGCUCaGCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 69305 0.84 0.059516
Target:  5'- gGCGCCGGUGGCGGCGGGagCGGGgGUg -3'
miRNA:   3'- aUGCGGCCGCUGCCGCUCa-GCCUgCG- -5'
23786 3' -61.1 NC_005261.1 + 34197 0.84 0.061083
Target:  5'- aGgGCCGGaggcaGACGGCGcGUCGGACGCg -3'
miRNA:   3'- aUgCGGCCg----CUGCCGCuCAGCCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 88184 0.83 0.064336
Target:  5'- gACGCCGGCGGCgccGGCGAGgCGGGcCGCg -3'
miRNA:   3'- aUGCGGCCGCUG---CCGCUCaGCCU-GCG- -5'
23786 3' -61.1 NC_005261.1 + 33605 0.83 0.069532
Target:  5'- gGCGCCGGCGcggGCGGCGGGgcccggGGGCGCg -3'
miRNA:   3'- aUGCGGCCGC---UGCCGCUCag----CCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 107127 0.83 0.071351
Target:  5'- cGCGCCGGCGACGGCGcccaCGGcCGCg -3'
miRNA:   3'- aUGCGGCCGCUGCCGCuca-GCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 74881 0.82 0.075129
Target:  5'- cGCGgCGGCGGCGGCgGAGUCGGcggcccGCGCu -3'
miRNA:   3'- aUGCgGCCGCUGCCG-CUCAGCC------UGCG- -5'
23786 3' -61.1 NC_005261.1 + 111425 0.81 0.100588
Target:  5'- cACGCCGGCgggcaagagacggacGAcCGGCGAGcCGGGCGCc -3'
miRNA:   3'- aUGCGGCCG---------------CU-GCCGCUCaGCCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 59497 0.8 0.104756
Target:  5'- cGCGCCaGCGGCGGCG-GUCGcACGCg -3'
miRNA:   3'- aUGCGGcCGCUGCCGCuCAGCcUGCG- -5'
23786 3' -61.1 NC_005261.1 + 117986 0.8 0.104756
Target:  5'- cGCGCacaccggccugaCGGCGGCGGCGcuggacgcuGUCGGACGCa -3'
miRNA:   3'- aUGCG------------GCCGCUGCCGCu--------CAGCCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 114353 0.79 0.121875
Target:  5'- gGCGCgUGGCcGCGGcCGAGUCGGugGCc -3'
miRNA:   3'- aUGCG-GCCGcUGCC-GCUCAGCCugCG- -5'
23786 3' -61.1 NC_005261.1 + 69505 0.79 0.13138
Target:  5'- gUACGCCGGCGGCGGgcugccgGAGcuggcgCGGGCGCu -3'
miRNA:   3'- -AUGCGGCCGCUGCCg------CUCa-----GCCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 88811 0.79 0.13138
Target:  5'- gACGCCGGCGGCGGgGcGG-CGGcGCGCg -3'
miRNA:   3'- aUGCGGCCGCUGCCgC-UCaGCC-UGCG- -5'
23786 3' -61.1 NC_005261.1 + 87607 0.79 0.13138
Target:  5'- -gUGCCGGCGACcaccGCGAcGUUGGGCGCg -3'
miRNA:   3'- auGCGGCCGCUGc---CGCU-CAGCCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 109108 0.79 0.138091
Target:  5'- gACGCCGGCcaugagGGCGGCGGuGUCGuGCGCg -3'
miRNA:   3'- aUGCGGCCG------CUGCCGCU-CAGCcUGCG- -5'
23786 3' -61.1 NC_005261.1 + 116475 0.78 0.145116
Target:  5'- -uUGCCGGCG-CgGGCGGGgCGGGCGCg -3'
miRNA:   3'- auGCGGCCGCuG-CCGCUCaGCCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 76451 0.78 0.156266
Target:  5'- cGCGCCcgacGGCGACGGCGGcGcCGGcGCGCg -3'
miRNA:   3'- aUGCGG----CCGCUGCCGCU-CaGCC-UGCG- -5'
23786 3' -61.1 NC_005261.1 + 38936 0.78 0.156266
Target:  5'- --aGCCGGCGGCcgGGCGGGcCGcGGCGCg -3'
miRNA:   3'- augCGGCCGCUG--CCGCUCaGC-CUGCG- -5'
23786 3' -61.1 NC_005261.1 + 3861 0.78 0.156266
Target:  5'- gGCGCCGcGCGGcCGGCGAGcaCGGcGCGCa -3'
miRNA:   3'- aUGCGGC-CGCU-GCCGCUCa-GCC-UGCG- -5'
23786 3' -61.1 NC_005261.1 + 1400 0.78 0.160152
Target:  5'- gGCGCCgcggccgcGGCGGCGGCGGGggCGG-CGCc -3'
miRNA:   3'- aUGCGG--------CCGCUGCCGCUCa-GCCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.