miRNA display CGI


Results 21 - 40 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23786 3' -61.1 NC_005261.1 + 76123 0.66 0.699494
Target:  5'- cGCGCC-GCGcCGGCGcccgucguggaGGUCGuggcGGCGCa -3'
miRNA:   3'- aUGCGGcCGCuGCCGC-----------UCAGC----CUGCG- -5'
23786 3' -61.1 NC_005261.1 + 77762 0.66 0.699494
Target:  5'- cGCaGCCGG-GGCGGCGGGgacGACGa -3'
miRNA:   3'- aUG-CGGCCgCUGCCGCUCagcCUGCg -5'
23786 3' -61.1 NC_005261.1 + 55210 0.66 0.698525
Target:  5'- cGCGgauCCGGCGgcccgagGCGGCGAGggCGGcagcacCGCa -3'
miRNA:   3'- aUGC---GGCCGC-------UGCCGCUCa-GCCu-----GCG- -5'
23786 3' -61.1 NC_005261.1 + 45998 0.66 0.696586
Target:  5'- gGCGCCaugugugcGCGGCaGGCGAuGUCcgggagcaggacggGGGCGCg -3'
miRNA:   3'- aUGCGGc-------CGCUG-CCGCU-CAG--------------CCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 34685 0.66 0.689785
Target:  5'- cGCGCUGcGUGACGGUGGGcCccuCGCa -3'
miRNA:   3'- aUGCGGC-CGCUGCCGCUCaGccuGCG- -5'
23786 3' -61.1 NC_005261.1 + 137839 0.66 0.689785
Target:  5'- aGgGCUGGCGGaguUGGCGGGgCuGGCGCc -3'
miRNA:   3'- aUgCGGCCGCU---GCCGCUCaGcCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 97666 0.66 0.689785
Target:  5'- gGgGCCGGCGuCcGCGGGgcUUGGGCGg -3'
miRNA:   3'- aUgCGGCCGCuGcCGCUC--AGCCUGCg -5'
23786 3' -61.1 NC_005261.1 + 5338 0.66 0.689785
Target:  5'- gGCGCgGGuCGGCcagccGGCuGGUCGGugGa -3'
miRNA:   3'- aUGCGgCC-GCUG-----CCGcUCAGCCugCg -5'
23786 3' -61.1 NC_005261.1 + 32331 0.66 0.689785
Target:  5'- gGCGcCCGGCG-UGGCc--UgGGACGCg -3'
miRNA:   3'- aUGC-GGCCGCuGCCGcucAgCCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 156 0.66 0.689785
Target:  5'- aGgGCUGGCGGaguUGGCGGGgCuGGCGCc -3'
miRNA:   3'- aUgCGGCCGCU---GCCGCUCaGcCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 79820 0.66 0.689785
Target:  5'- aUGCGCgCGGCGGC-GCG-G-CGGccaGCGCa -3'
miRNA:   3'- -AUGCG-GCCGCUGcCGCuCaGCC---UGCG- -5'
23786 3' -61.1 NC_005261.1 + 21805 0.66 0.689785
Target:  5'- -cCGCCGGcCGggccgggcccGCGGCGGGcgcgcgugCGGGCGg -3'
miRNA:   3'- auGCGGCC-GC----------UGCCGCUCa-------GCCUGCg -5'
23786 3' -61.1 NC_005261.1 + 90883 0.66 0.689785
Target:  5'- cGCGCUgGGCGACGGCauggcgcggcagGucUCGGcgGCGCu -3'
miRNA:   3'- aUGCGG-CCGCUGCCG------------CucAGCC--UGCG- -5'
23786 3' -61.1 NC_005261.1 + 52268 0.66 0.689785
Target:  5'- cGCGCCgGGgGGCGGUG-GUCacGACGg -3'
miRNA:   3'- aUGCGG-CCgCUGCCGCuCAGc-CUGCg -5'
23786 3' -61.1 NC_005261.1 + 15933 0.66 0.683938
Target:  5'- gGgGCCGGggcccgggcaggagcCGGgGGCGAGUggCGGGCGg -3'
miRNA:   3'- aUgCGGCC---------------GCUgCCGCUCA--GCCUGCg -5'
23786 3' -61.1 NC_005261.1 + 29986 0.66 0.680032
Target:  5'- -cCGCCGGCGcgucCGGC-AG-CGG-CGCg -3'
miRNA:   3'- auGCGGCCGCu---GCCGcUCaGCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 30967 0.66 0.680032
Target:  5'- -cCGCC-GCGACGGCccGcCGcGGCGCa -3'
miRNA:   3'- auGCGGcCGCUGCCGcuCaGC-CUGCG- -5'
23786 3' -61.1 NC_005261.1 + 32219 0.66 0.680032
Target:  5'- aGCuGCCGGCcGCGGCG-GUggccuucugcgCGGcCGCg -3'
miRNA:   3'- aUG-CGGCCGcUGCCGCuCA-----------GCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 97945 0.66 0.680032
Target:  5'- aGCuCCGGCGGCaaCGAGggaGGugGCg -3'
miRNA:   3'- aUGcGGCCGCUGccGCUCag-CCugCG- -5'
23786 3' -61.1 NC_005261.1 + 35235 0.66 0.680032
Target:  5'- gAC-CCGGCaggaggagaGGCGGCGGGaUgGGAgGCa -3'
miRNA:   3'- aUGcGGCCG---------CUGCCGCUC-AgCCUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.