miRNA display CGI


Results 1 - 20 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23786 3' -61.1 NC_005261.1 + 74 0.68 0.542964
Target:  5'- cGCGCgCGGgGGCGGgGuG-CGgGGCGCg -3'
miRNA:   3'- aUGCG-GCCgCUGCCgCuCaGC-CUGCG- -5'
23786 3' -61.1 NC_005261.1 + 156 0.66 0.689785
Target:  5'- aGgGCUGGCGGaguUGGCGGGgCuGGCGCc -3'
miRNA:   3'- aUgCGGCCGCU---GCCGCUCaGcCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 360 0.76 0.189865
Target:  5'- cGCGgcCCGGCGGCGGUGGcggCGGugGCg -3'
miRNA:   3'- aUGC--GGCCGCUGCCGCUca-GCCugCG- -5'
23786 3' -61.1 NC_005261.1 + 392 0.71 0.391306
Target:  5'- gGCGgCGGCGGCGGCGgcagcGGUCcuGGuccCGCg -3'
miRNA:   3'- aUGCgGCCGCUGCCGC-----UCAG--CCu--GCG- -5'
23786 3' -61.1 NC_005261.1 + 524 0.71 0.383261
Target:  5'- gGCGCgGGCgGGCGGgGGGcagggCGGACGg -3'
miRNA:   3'- aUGCGgCCG-CUGCCgCUCa----GCCUGCg -5'
23786 3' -61.1 NC_005261.1 + 652 0.66 0.660423
Target:  5'- aGCGCCGcgucccCGGCGcCGAGUCcuggcccuccgcGGACGCu -3'
miRNA:   3'- aUGCGGCc-----GCUGCcGCUCAG------------CCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 1043 0.72 0.375327
Target:  5'- gGCgGCgGGCGGCGGCGuuagCGG-CGCg -3'
miRNA:   3'- aUG-CGgCCGCUGCCGCuca-GCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 1169 0.73 0.302252
Target:  5'- cGCGCCGGCccgcgccGCGGCcggggccgGGGcCGGGCGCg -3'
miRNA:   3'- aUGCGGCCGc------UGCCG--------CUCaGCCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 1308 0.72 0.337352
Target:  5'- -uCGCCGGCGGCGGCacgcgcUCcgGGACGCc -3'
miRNA:   3'- auGCGGCCGCUGCCGcuc---AG--CCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 1400 0.78 0.160152
Target:  5'- gGCGCCgcggccgcGGCGGCGGCGGGggCGG-CGCc -3'
miRNA:   3'- aUGCGG--------CCGCUGCCGCUCa-GCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 1500 0.67 0.601324
Target:  5'- -cCGCC-GCGGcCGGCagcucGUCGGGCGCc -3'
miRNA:   3'- auGCGGcCGCU-GCCGcu---CAGCCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 1576 0.66 0.70915
Target:  5'- cGCGCCGaGCccccagcgguuGGCGGCG---CGGugGCu -3'
miRNA:   3'- aUGCGGC-CG-----------CUGCCGCucaGCCugCG- -5'
23786 3' -61.1 NC_005261.1 + 1777 0.66 0.699494
Target:  5'- cACGuuGGCGccGCGGCaGAGccgcagCGGcgGCGCc -3'
miRNA:   3'- aUGCggCCGC--UGCCG-CUCa-----GCC--UGCG- -5'
23786 3' -61.1 NC_005261.1 + 2164 0.73 0.295578
Target:  5'- gAC-CCGGCccaGGCGuGCGAGUCGG-CGCu -3'
miRNA:   3'- aUGcGGCCG---CUGC-CGCUCAGCCuGCG- -5'
23786 3' -61.1 NC_005261.1 + 2391 0.7 0.433136
Target:  5'- cGCGCUGGCGGCGaGCGcGcccgCGGgccccGCGCg -3'
miRNA:   3'- aUGCGGCCGCUGC-CGCuCa---GCC-----UGCG- -5'
23786 3' -61.1 NC_005261.1 + 2449 0.7 0.44181
Target:  5'- aGCGCCucggGGuCGAaGGCGAGcgcCGGGCGCc -3'
miRNA:   3'- aUGCGG----CC-GCUgCCGCUCa--GCCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 2548 0.68 0.552583
Target:  5'- aGCGCC-GCGGCGcUGGGcgCGGGCGUg -3'
miRNA:   3'- aUGCGGcCGCUGCcGCUCa-GCCUGCG- -5'
23786 3' -61.1 NC_005261.1 + 2605 0.73 0.30904
Target:  5'- -cCGCCGuCGGCGGCGGGgccgcCGGGCGg -3'
miRNA:   3'- auGCGGCcGCUGCCGCUCa----GCCUGCg -5'
23786 3' -61.1 NC_005261.1 + 2797 0.71 0.407722
Target:  5'- -cCGCCGGCGGCcGgGAGgggcCGGGCGg -3'
miRNA:   3'- auGCGGCCGCUGcCgCUCa---GCCUGCg -5'
23786 3' -61.1 NC_005261.1 + 3359 0.7 0.477454
Target:  5'- cGCGCCGGCcuucagGGCcGCGAGcgCGGcCGCc -3'
miRNA:   3'- aUGCGGCCG------CUGcCGCUCa-GCCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.