Results 1 - 20 of 406 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23786 | 3' | -61.1 | NC_005261.1 | + | 29411 | 0.66 | 0.70915 |
Target: 5'- cGCGCuacgCGGCGGCcGCGGGgcccgCGGcCGUg -3' miRNA: 3'- aUGCG----GCCGCUGcCGCUCa----GCCuGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 88811 | 0.79 | 0.13138 |
Target: 5'- gACGCCGGCGGCGGgGcGG-CGGcGCGCg -3' miRNA: 3'- aUGCGGCCGCUGCCgC-UCaGCC-UGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 87607 | 0.79 | 0.13138 |
Target: 5'- -gUGCCGGCGACcaccGCGAcGUUGGGCGCg -3' miRNA: 3'- auGCGGCCGCUGc---CGCU-CAGCCUGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 109108 | 0.79 | 0.138091 |
Target: 5'- gACGCCGGCcaugagGGCGGCGGuGUCGuGCGCg -3' miRNA: 3'- aUGCGGCCG------CUGCCGCU-CAGCcUGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 116475 | 0.78 | 0.145116 |
Target: 5'- -uUGCCGGCG-CgGGCGGGgCGGGCGCg -3' miRNA: 3'- auGCGGCCGCuG-CCGCUCaGCCUGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 3861 | 0.78 | 0.156266 |
Target: 5'- gGCGCCGcGCGGcCGGCGAGcaCGGcGCGCa -3' miRNA: 3'- aUGCGGC-CGCU-GCCGCUCa-GCC-UGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 38936 | 0.78 | 0.156266 |
Target: 5'- --aGCCGGCGGCcgGGCGGGcCGcGGCGCg -3' miRNA: 3'- augCGGCCGCUG--CCGCUCaGC-CUGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 76451 | 0.78 | 0.156266 |
Target: 5'- cGCGCCcgacGGCGACGGCGGcGcCGGcGCGCg -3' miRNA: 3'- aUGCGG----CCGCUGCCGCU-CaGCC-UGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 86586 | 0.78 | 0.160152 |
Target: 5'- --aGCCGGCGGCGGCGccguccuuggcGUCGGcCGCg -3' miRNA: 3'- augCGGCCGCUGCCGCu----------CAGCCuGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 69505 | 0.79 | 0.13138 |
Target: 5'- gUACGCCGGCGGCGGgcugccgGAGcuggcgCGGGCGCu -3' miRNA: 3'- -AUGCGGCCGCUGCCg------CUCa-----GCCUGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 114353 | 0.79 | 0.121875 |
Target: 5'- gGCGCgUGGCcGCGGcCGAGUCGGugGCc -3' miRNA: 3'- aUGCG-GCCGcUGCC-GCUCAGCCugCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 117986 | 0.8 | 0.104756 |
Target: 5'- cGCGCacaccggccugaCGGCGGCGGCGcuggacgcuGUCGGACGCa -3' miRNA: 3'- aUGCG------------GCCGCUGCCGCu--------CAGCCUGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 69305 | 0.84 | 0.059516 |
Target: 5'- gGCGCCGGUGGCGGCGGGagCGGGgGUg -3' miRNA: 3'- aUGCGGCCGCUGCCGCUCa-GCCUgCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 34197 | 0.84 | 0.061083 |
Target: 5'- aGgGCCGGaggcaGACGGCGcGUCGGACGCg -3' miRNA: 3'- aUgCGGCCg----CUGCCGCuCAGCCUGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 88184 | 0.83 | 0.064336 |
Target: 5'- gACGCCGGCGGCgccGGCGAGgCGGGcCGCg -3' miRNA: 3'- aUGCGGCCGCUG---CCGCUCaGCCU-GCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 33605 | 0.83 | 0.069532 |
Target: 5'- gGCGCCGGCGcggGCGGCGGGgcccggGGGCGCg -3' miRNA: 3'- aUGCGGCCGC---UGCCGCUCag----CCUGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 107127 | 0.83 | 0.071351 |
Target: 5'- cGCGCCGGCGACGGCGcccaCGGcCGCg -3' miRNA: 3'- aUGCGGCCGCUGCCGCuca-GCCuGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 74881 | 0.82 | 0.075129 |
Target: 5'- cGCGgCGGCGGCGGCgGAGUCGGcggcccGCGCu -3' miRNA: 3'- aUGCgGCCGCUGCCG-CUCAGCC------UGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 111425 | 0.81 | 0.100588 |
Target: 5'- cACGCCGGCgggcaagagacggacGAcCGGCGAGcCGGGCGCc -3' miRNA: 3'- aUGCGGCCG---------------CU-GCCGCUCaGCCUGCG- -5' |
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23786 | 3' | -61.1 | NC_005261.1 | + | 59497 | 0.8 | 0.104756 |
Target: 5'- cGCGCCaGCGGCGGCG-GUCGcACGCg -3' miRNA: 3'- aUGCGGcCGCUGCCGCuCAGCcUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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