miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23786 5' -57.1 NC_005261.1 + 74407 0.66 0.866286
Target:  5'- cCGUuUUCGGCCGCGGgCgggAGGGCcGAg -3'
miRNA:   3'- aGUAcAAGCUGGUGCCgG---UCCCG-CUg -5'
23786 5' -57.1 NC_005261.1 + 34918 0.66 0.866286
Target:  5'- gUCggGgcgCGGCCacgcgggggGCGGCCGGcGCGACc -3'
miRNA:   3'- -AGuaCaa-GCUGG---------UGCCGGUCcCGCUG- -5'
23786 5' -57.1 NC_005261.1 + 100670 0.66 0.866286
Target:  5'- gUCGcgggGUUCGcgcgcgagugcACCGCGGCCGcGGCGcGCg -3'
miRNA:   3'- -AGUa---CAAGC-----------UGGUGCCGGUcCCGC-UG- -5'
23786 5' -57.1 NC_005261.1 + 22742 0.66 0.858707
Target:  5'- gUCGggcgcgGggCGGCgGCGGCCcacgcgucugGGGGCGGg -3'
miRNA:   3'- -AGUa-----CaaGCUGgUGCCGG----------UCCCGCUg -5'
23786 5' -57.1 NC_005261.1 + 125750 0.66 0.858707
Target:  5'- -------gGGCCGgGGCCAGGGCuGCc -3'
miRNA:   3'- aguacaagCUGGUgCCGGUCCCGcUG- -5'
23786 5' -57.1 NC_005261.1 + 77212 0.66 0.858707
Target:  5'- -gGUGUUC--CCGCuGGCCGGGGgGGa -3'
miRNA:   3'- agUACAAGcuGGUG-CCGGUCCCgCUg -5'
23786 5' -57.1 NC_005261.1 + 59456 0.66 0.858707
Target:  5'- ---aGcgCGGCCGCGGCguCGGGG-GGCa -3'
miRNA:   3'- aguaCaaGCUGGUGCCG--GUCCCgCUG- -5'
23786 5' -57.1 NC_005261.1 + 383 0.66 0.850924
Target:  5'- -gGUGgcggCGGCgGCGGCgGcGGCGGCa -3'
miRNA:   3'- agUACaa--GCUGgUGCCGgUcCCGCUG- -5'
23786 5' -57.1 NC_005261.1 + 138054 0.66 0.850924
Target:  5'- -gGUGgcggCGGCgGCGGCgGcGGCGGCa -3'
miRNA:   3'- agUACaa--GCUGgUGCCGgUcCCGCUG- -5'
23786 5' -57.1 NC_005261.1 + 22799 0.66 0.842942
Target:  5'- -----gUUG-UCGCGGCCGGcGGCGGCg -3'
miRNA:   3'- aguacaAGCuGGUGCCGGUC-CCGCUG- -5'
23786 5' -57.1 NC_005261.1 + 32544 0.66 0.842942
Target:  5'- ------cCGGCCGCGGCgCGGGcCGGCg -3'
miRNA:   3'- aguacaaGCUGGUGCCG-GUCCcGCUG- -5'
23786 5' -57.1 NC_005261.1 + 17048 0.66 0.842942
Target:  5'- -----cUCGACgggcugcuCGCGGCCguccuggaAGGGCGACg -3'
miRNA:   3'- aguacaAGCUG--------GUGCCGG--------UCCCGCUG- -5'
23786 5' -57.1 NC_005261.1 + 116469 0.66 0.842942
Target:  5'- -uGUGUUUuGCCggcGCGGgCGGGGCGGg -3'
miRNA:   3'- agUACAAGcUGG---UGCCgGUCCCGCUg -5'
23786 5' -57.1 NC_005261.1 + 76531 0.66 0.842942
Target:  5'- aCGUGggCGGguaccucgcccuCUACGGCauGGGCGACg -3'
miRNA:   3'- aGUACaaGCU------------GGUGCCGguCCCGCUG- -5'
23786 5' -57.1 NC_005261.1 + 59660 0.66 0.842942
Target:  5'- ---cGggCGACUGCGGCCGGGuCGuCg -3'
miRNA:   3'- aguaCaaGCUGGUGCCGGUCCcGCuG- -5'
23786 5' -57.1 NC_005261.1 + 84282 0.66 0.842942
Target:  5'- -gGUGccgccggCGGCCcCGGCCccGGCGGCg -3'
miRNA:   3'- agUACaa-----GCUGGuGCCGGucCCGCUG- -5'
23786 5' -57.1 NC_005261.1 + 123008 0.66 0.83477
Target:  5'- ------aCGGCCGCGGCCGuGGCGuCc -3'
miRNA:   3'- aguacaaGCUGGUGCCGGUcCCGCuG- -5'
23786 5' -57.1 NC_005261.1 + 53712 0.66 0.83477
Target:  5'- ---cGcgCG-CCGCGGCCAGcuGCGGCg -3'
miRNA:   3'- aguaCaaGCuGGUGCCGGUCc-CGCUG- -5'
23786 5' -57.1 NC_005261.1 + 29441 0.66 0.83477
Target:  5'- cCGUGUUCGugC-CGGagauGGGgGACg -3'
miRNA:   3'- aGUACAAGCugGuGCCggu-CCCgCUG- -5'
23786 5' -57.1 NC_005261.1 + 44029 0.66 0.83477
Target:  5'- ---cGggCGGCCgccgcgcgGCGGCCGcGGGCGGg -3'
miRNA:   3'- aguaCaaGCUGG--------UGCCGGU-CCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.