miRNA display CGI


Results 1 - 20 of 367 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23787 3' -59.2 NC_005261.1 + 59044 0.66 0.796712
Target:  5'- cCGCcGCGCgaGCUCaGcGCGcGCGGCCGc -3'
miRNA:   3'- aGCGuCGCGg-UGAG-CaUGC-CGCUGGC- -5'
23787 3' -59.2 NC_005261.1 + 13323 0.77 0.238444
Target:  5'- aCGCAGCGCC-CUCGcacuCGcGCGGCCa -3'
miRNA:   3'- aGCGUCGCGGuGAGCau--GC-CGCUGGc -5'
23787 3' -59.2 NC_005261.1 + 46246 0.77 0.238444
Target:  5'- gUCGCAG-GCCGCg---GCGGCGGCCGc -3'
miRNA:   3'- -AGCGUCgCGGUGagcaUGCCGCUGGC- -5'
23787 3' -59.2 NC_005261.1 + 16094 0.77 0.238444
Target:  5'- aCGCGGCGgCAC-CG-GCGGCGGCCa -3'
miRNA:   3'- aGCGUCGCgGUGaGCaUGCCGCUGGc -5'
23787 3' -59.2 NC_005261.1 + 93737 0.77 0.238444
Target:  5'- -gGCAGCGCgCGCuUCGUAcuCGGCGGCCc -3'
miRNA:   3'- agCGUCGCG-GUG-AGCAU--GCCGCUGGc -5'
23787 3' -59.2 NC_005261.1 + 44023 0.76 0.244136
Target:  5'- gCGCGGCgggcgGCCGC-CGcGCGGCGGCCGc -3'
miRNA:   3'- aGCGUCG-----CGGUGaGCaUGCCGCUGGC- -5'
23787 3' -59.2 NC_005261.1 + 103878 0.76 0.25586
Target:  5'- -gGCGGCGCCGC-CGgGCGGCGcGCCa -3'
miRNA:   3'- agCGUCGCGGUGaGCaUGCCGC-UGGc -5'
23787 3' -59.2 NC_005261.1 + 90216 0.75 0.287184
Target:  5'- gCGgAGCGCC-CUCGcGCGGCGGgCGg -3'
miRNA:   3'- aGCgUCGCGGuGAGCaUGCCGCUgGC- -5'
23787 3' -59.2 NC_005261.1 + 47139 0.75 0.2938
Target:  5'- gUCGCgcacAGCGCCGg-CGU-CGGCGGCCGa -3'
miRNA:   3'- -AGCG----UCGCGGUgaGCAuGCCGCUGGC- -5'
23787 3' -59.2 NC_005261.1 + 67114 0.77 0.232862
Target:  5'- -gGCGGCGCgCGCa-GUGCGGCGGCCc -3'
miRNA:   3'- agCGUCGCG-GUGagCAUGCCGCUGGc -5'
23787 3' -59.2 NC_005261.1 + 47697 0.77 0.227392
Target:  5'- cCGCGGCGCCGCgUCG-GCGGCG-UCGg -3'
miRNA:   3'- aGCGUCGCGGUG-AGCaUGCCGCuGGC- -5'
23787 3' -59.2 NC_005261.1 + 123859 0.77 0.216776
Target:  5'- -aGCGGCaGCCGCUCGUACGG-GAUCu -3'
miRNA:   3'- agCGUCG-CGGUGAGCAUGCCgCUGGc -5'
23787 3' -59.2 NC_005261.1 + 52962 0.81 0.125752
Target:  5'- -aGCAGCGCCGCgccgGUGCGGCG-CCGg -3'
miRNA:   3'- agCGUCGCGGUGag--CAUGCCGCuGGC- -5'
23787 3' -59.2 NC_005261.1 + 50422 0.81 0.128982
Target:  5'- gUCGCGGaGCCGCUCGUGCaGCGugCGc -3'
miRNA:   3'- -AGCGUCgCGGUGAGCAUGcCGCugGC- -5'
23787 3' -59.2 NC_005261.1 + 106523 0.8 0.135674
Target:  5'- -aGCAGCGCCAgcaccgccucCUCG-GCGGCGGCCGc -3'
miRNA:   3'- agCGUCGCGGU----------GAGCaUGCCGCUGGC- -5'
23787 3' -59.2 NC_005261.1 + 33152 0.79 0.165739
Target:  5'- gCGUAGUGUCAC-CGcGCGGCGGCCGa -3'
miRNA:   3'- aGCGUCGCGGUGaGCaUGCCGCUGGC- -5'
23787 3' -59.2 NC_005261.1 + 64776 0.79 0.174139
Target:  5'- cUCGCGgcGCGCCACgaCGUGCGGCGcagcGCCGu -3'
miRNA:   3'- -AGCGU--CGCGGUGa-GCAUGCCGC----UGGC- -5'
23787 3' -59.2 NC_005261.1 + 108744 0.78 0.182917
Target:  5'- -gGCGGCGCCGCggCGUccGCGGCGcGCCGc -3'
miRNA:   3'- agCGUCGCGGUGa-GCA--UGCCGC-UGGC- -5'
23787 3' -59.2 NC_005261.1 + 64284 0.78 0.201163
Target:  5'- gUGCAGCGCCGCguccagCGUGCGcauguuucgcgucGCGGCCGu -3'
miRNA:   3'- aGCGUCGCGGUGa-----GCAUGC-------------CGCUGGC- -5'
23787 3' -59.2 NC_005261.1 + 62294 0.78 0.206588
Target:  5'- aCGuCGGCGCCGCgcgggCGcGCGGCGGCCc -3'
miRNA:   3'- aGC-GUCGCGGUGa----GCaUGCCGCUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.