miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23787 5' -54.7 NC_005261.1 + 30928 0.66 0.937111
Target:  5'- cGGCcgccGGcGCAGCcccucggGGGCGG-GCCUCGa -3'
miRNA:   3'- -CCG----UCaUGUUGua-----CUCGCCgCGGAGC- -5'
23787 5' -54.7 NC_005261.1 + 34349 0.66 0.937111
Target:  5'- gGGCGGc-CGACG-GGGCcgGGCGCCgcgCGg -3'
miRNA:   3'- -CCGUCauGUUGUaCUCG--CCGCGGa--GC- -5'
23787 5' -54.7 NC_005261.1 + 18788 0.66 0.937111
Target:  5'- cGGCgagGGUGcCGGCuUGAGCGGCGgCgggCa -3'
miRNA:   3'- -CCG---UCAU-GUUGuACUCGCCGCgGa--Gc -5'
23787 5' -54.7 NC_005261.1 + 62526 0.66 0.937111
Target:  5'- aGGCGccGcGCGGCAUGGGCcccacgccgagaGGCGCCg-- -3'
miRNA:   3'- -CCGU--CaUGUUGUACUCG------------CCGCGGagc -5'
23787 5' -54.7 NC_005261.1 + 127736 0.66 0.937111
Target:  5'- aGCGGgagcuugGCGGCggGAGCGG-GCCgCGg -3'
miRNA:   3'- cCGUCa------UGUUGuaCUCGCCgCGGaGC- -5'
23787 5' -54.7 NC_005261.1 + 4463 0.66 0.932079
Target:  5'- aGCGGcgGCGGCccGucgcGCGGCGCCgCGg -3'
miRNA:   3'- cCGUCa-UGUUGuaCu---CGCCGCGGaGC- -5'
23787 5' -54.7 NC_005261.1 + 77545 0.66 0.932079
Target:  5'- gGGCuGGUACGGCGccgccgccAGUGGCGCCgccgCGc -3'
miRNA:   3'- -CCG-UCAUGUUGUac------UCGCCGCGGa---GC- -5'
23787 5' -54.7 NC_005261.1 + 135762 0.66 0.931562
Target:  5'- cGCGGUGCGcuccggcGCA-GAGCGcGUGCCgcugUCGg -3'
miRNA:   3'- cCGUCAUGU-------UGUaCUCGC-CGCGG----AGC- -5'
23787 5' -54.7 NC_005261.1 + 23170 0.66 0.9268
Target:  5'- cGGCAGgcgcgccggggGCGACAgcGAGCG-CGCCgCGg -3'
miRNA:   3'- -CCGUCa----------UGUUGUa-CUCGCcGCGGaGC- -5'
23787 5' -54.7 NC_005261.1 + 14843 0.66 0.9268
Target:  5'- aGCAcgGCAGCAggcGGCGGCGCaUCGc -3'
miRNA:   3'- cCGUcaUGUUGUac-UCGCCGCGgAGC- -5'
23787 5' -54.7 NC_005261.1 + 98250 0.66 0.9268
Target:  5'- cGGCccGGUGCGGCGcGucaGGCGGCGCgcgcgUUCGa -3'
miRNA:   3'- -CCG--UCAUGUUGUaC---UCGCCGCG-----GAGC- -5'
23787 5' -54.7 NC_005261.1 + 101224 0.66 0.9268
Target:  5'- cGCAGcGCGucga-GGUGGCGCCUCa -3'
miRNA:   3'- cCGUCaUGUuguacUCGCCGCGGAGc -5'
23787 5' -54.7 NC_005261.1 + 30140 0.66 0.9268
Target:  5'- cGCGGUGgAGCGcGcgcgccuuAGCGGCGCCgCGc -3'
miRNA:   3'- cCGUCAUgUUGUaC--------UCGCCGCGGaGC- -5'
23787 5' -54.7 NC_005261.1 + 70887 0.66 0.9268
Target:  5'- cGGCGGUGC-ACAUG-GCcGUGCaCUUGc -3'
miRNA:   3'- -CCGUCAUGuUGUACuCGcCGCG-GAGC- -5'
23787 5' -54.7 NC_005261.1 + 100476 0.66 0.9268
Target:  5'- cGCGGUAgcacacccggUAGCA-GAGCGGCguGCCgUCGg -3'
miRNA:   3'- cCGUCAU----------GUUGUaCUCGCCG--CGG-AGC- -5'
23787 5' -54.7 NC_005261.1 + 70479 0.66 0.923516
Target:  5'- cGCgGGUGCGcgcGCGUGAGCacguagcuggcguucGGCGCCaCGg -3'
miRNA:   3'- cCG-UCAUGU---UGUACUCG---------------CCGCGGaGC- -5'
23787 5' -54.7 NC_005261.1 + 59439 0.66 0.921276
Target:  5'- cGGCAGgcgccgGCAGCAgc-GCGGCcgcgGCgUCGg -3'
miRNA:   3'- -CCGUCa-----UGUUGUacuCGCCG----CGgAGC- -5'
23787 5' -54.7 NC_005261.1 + 32188 0.66 0.921276
Target:  5'- gGGCGGcGC-GCGcugGAGCuGGCGCC-CGa -3'
miRNA:   3'- -CCGUCaUGuUGUa--CUCG-CCGCGGaGC- -5'
23787 5' -54.7 NC_005261.1 + 72289 0.66 0.921276
Target:  5'- cGGCugaGGUucGCGACGUGGGCcaCGCgCUCGa -3'
miRNA:   3'- -CCG---UCA--UGUUGUACUCGccGCG-GAGC- -5'
23787 5' -54.7 NC_005261.1 + 95645 0.66 0.921276
Target:  5'- gGGCgAGcGCGACGc--GCGGCGCCgCGa -3'
miRNA:   3'- -CCG-UCaUGUUGUacuCGCCGCGGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.