miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23788 3' -56.5 NC_005261.1 + 90100 0.66 0.874312
Target:  5'- gCCCguucgCCGGcuGGGccgacgcggcccgcgGCGAGGGCGAGGa- -3'
miRNA:   3'- -GGGa----GGUC--UUCa--------------CGCUCCCGUUCCac -5'
23788 3' -56.5 NC_005261.1 + 49811 0.66 0.870648
Target:  5'- gCCCUCCGcggggcgcguGGAGUuaagcaccagcacCGAGGGCGugaAGGUGa -3'
miRNA:   3'- -GGGAGGU----------CUUCAc------------GCUCCCGU---UCCAC- -5'
23788 3' -56.5 NC_005261.1 + 132542 0.66 0.86618
Target:  5'- gCCCUCgCGc----GCGAGGGCGAGGc- -3'
miRNA:   3'- -GGGAG-GUcuucaCGCUCCCGUUCCac -5'
23788 3' -56.5 NC_005261.1 + 110791 0.66 0.86618
Target:  5'- -gCUCCGGggGacggcggGCGAGgaGGCGGGGg- -3'
miRNA:   3'- ggGAGGUCuuCa------CGCUC--CCGUUCCac -5'
23788 3' -56.5 NC_005261.1 + 69215 0.66 0.86618
Target:  5'- gUCCUCCGGGAgcuGUGCGcgcuGGGGC--GGUu -3'
miRNA:   3'- -GGGAGGUCUU---CACGC----UCCCGuuCCAc -5'
23788 3' -56.5 NC_005261.1 + 24177 0.66 0.863918
Target:  5'- gCUUCCGGggGgucgucgGCGAGgcuccaggaucgucGGCGGGGUc -3'
miRNA:   3'- gGGAGGUCuuCa------CGCUC--------------CCGUUCCAc -5'
23788 3' -56.5 NC_005261.1 + 24261 0.67 0.839463
Target:  5'- cCCCUCUgcgGGGAGggggcuugcccggGUGGGGGUggGGg- -3'
miRNA:   3'- -GGGAGG---UCUUCa------------CGCUCCCGuuCCac -5'
23788 3' -56.5 NC_005261.1 + 112061 0.67 0.834513
Target:  5'- gCCUUCGGgcGUgcccucgucgGCGAGGGCGccacguGGUGc -3'
miRNA:   3'- gGGAGGUCuuCA----------CGCUCCCGUu-----CCAC- -5'
23788 3' -56.5 NC_005261.1 + 121099 0.67 0.834513
Target:  5'- gCCUCCAGGccGUGCGgguccucuAGGGCGcGGa- -3'
miRNA:   3'- gGGAGGUCUu-CACGC--------UCCCGUuCCac -5'
23788 3' -56.5 NC_005261.1 + 11693 0.67 0.826115
Target:  5'- aCCCcgCCGGAgagaaaccGGaaGUGGGGGCGAGGg- -3'
miRNA:   3'- -GGGa-GGUCU--------UCa-CGCUCCCGUUCCac -5'
23788 3' -56.5 NC_005261.1 + 136226 0.67 0.81754
Target:  5'- gCCaUCCGGGgacuAGaGCGAGGGCAgAGGg- -3'
miRNA:   3'- gGG-AGGUCU----UCaCGCUCCCGU-UCCac -5'
23788 3' -56.5 NC_005261.1 + 7755 0.67 0.808796
Target:  5'- aCCCUgCGGuccggccguguGAGUGCGuacgggaaggcGGGGCAGGGc- -3'
miRNA:   3'- -GGGAgGUC-----------UUCACGC-----------UCCCGUUCCac -5'
23788 3' -56.5 NC_005261.1 + 136546 0.67 0.808796
Target:  5'- gCCCUcggCCAGcuG-GUGGGGGCAgaaggcgcGGGUGg -3'
miRNA:   3'- -GGGA---GGUCuuCaCGCUCCCGU--------UCCAC- -5'
23788 3' -56.5 NC_005261.1 + 81921 0.68 0.76283
Target:  5'- cUCCUCCuuGAGGUGCGGGaGCAGGc-- -3'
miRNA:   3'- -GGGAGGu-CUUCACGCUCcCGUUCcac -5'
23788 3' -56.5 NC_005261.1 + 6182 0.69 0.723906
Target:  5'- gCCCgCCu-AGGUGCGAGGGCGGGc-- -3'
miRNA:   3'- -GGGaGGucUUCACGCUCCCGUUCcac -5'
23788 3' -56.5 NC_005261.1 + 19584 0.7 0.673532
Target:  5'- uUCUCCAGAGGUGCGuGuGCA-GGUc -3'
miRNA:   3'- gGGAGGUCUUCACGCuCcCGUuCCAc -5'
23788 3' -56.5 NC_005261.1 + 24114 0.7 0.642827
Target:  5'- cCCCgggCCcGAGGcggggGUGGGGGCuGGGUGg -3'
miRNA:   3'- -GGGa--GGuCUUCa----CGCUCCCGuUCCAC- -5'
23788 3' -56.5 NC_005261.1 + 112575 0.72 0.531132
Target:  5'- aCCUCgAGGGcUGCGAGGGCGucGUGu -3'
miRNA:   3'- gGGAGgUCUUcACGCUCCCGUucCAC- -5'
23788 3' -56.5 NC_005261.1 + 59997 0.73 0.492086
Target:  5'- aCCCUCgGGcAGcGCGAcGGGCAGGGa- -3'
miRNA:   3'- -GGGAGgUCuUCaCGCU-CCCGUUCCac -5'
23788 3' -56.5 NC_005261.1 + 12418 0.73 0.492086
Target:  5'- gCCCUCCAGggGcgGCGgAGGGCuugcGGc- -3'
miRNA:   3'- -GGGAGGUCuuCa-CGC-UCCCGuu--CCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.