miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23788 5' -63.1 NC_005261.1 + 100245 0.66 0.570547
Target:  5'- gGCgCACGuCUGCcagcccccaGUCGGCGCGccgGUGGCg -3'
miRNA:   3'- -CG-GUGC-GACG---------CGGCCGCGCa--CGUCGa -5'
23788 5' -63.1 NC_005261.1 + 128817 0.66 0.570547
Target:  5'- gGCuCGCGCUGCgGCUGaCGCucgcGCGGCUg -3'
miRNA:   3'- -CG-GUGCGACG-CGGCcGCGca--CGUCGA- -5'
23788 5' -63.1 NC_005261.1 + 1435 0.66 0.570547
Target:  5'- cGCCuccaGCaccaGCGgCGGCGCcucggcGUGCGGCUc -3'
miRNA:   3'- -CGGug--CGa---CGCgGCCGCG------CACGUCGA- -5'
23788 5' -63.1 NC_005261.1 + 99520 0.66 0.570547
Target:  5'- cGCC-CGUUGCGUgcaccgucgagGGCGCGUccagGCGGCg -3'
miRNA:   3'- -CGGuGCGACGCGg----------CCGCGCA----CGUCGa -5'
23788 5' -63.1 NC_005261.1 + 4312 0.66 0.570547
Target:  5'- cGCCGCGUaGCGCgCGGCcgccucGCGgaucucgggGCAGUc -3'
miRNA:   3'- -CGGUGCGaCGCG-GCCG------CGCa--------CGUCGa -5'
23788 5' -63.1 NC_005261.1 + 74045 0.66 0.570547
Target:  5'- aCCA-GC-GCGCCGGgGgGcUGCGGCa -3'
miRNA:   3'- cGGUgCGaCGCGGCCgCgC-ACGUCGa -5'
23788 5' -63.1 NC_005261.1 + 29940 0.66 0.570547
Target:  5'- cGCUGCGCUGCgGCCuGCcGCGagGC-GCUa -3'
miRNA:   3'- -CGGUGCGACG-CGGcCG-CGCa-CGuCGA- -5'
23788 5' -63.1 NC_005261.1 + 90015 0.66 0.570547
Target:  5'- uGCC-UGCUGCGCCuGGCcCG-GgAGCg -3'
miRNA:   3'- -CGGuGCGACGCGG-CCGcGCaCgUCGa -5'
23788 5' -63.1 NC_005261.1 + 115480 0.66 0.570547
Target:  5'- gGUCGCggGCUcggccGCGgCGGCGCGccGCAGCc -3'
miRNA:   3'- -CGGUG--CGA-----CGCgGCCGCGCa-CGUCGa -5'
23788 5' -63.1 NC_005261.1 + 53100 0.66 0.570547
Target:  5'- aGgCACGCaGCGCCgcGGCGC-UGCGcGCc -3'
miRNA:   3'- -CgGUGCGaCGCGG--CCGCGcACGU-CGa -5'
23788 5' -63.1 NC_005261.1 + 121493 0.66 0.570547
Target:  5'- cGCCACGggGCGgCGGgGCGggcaUGgGGCc -3'
miRNA:   3'- -CGGUGCgaCGCgGCCgCGC----ACgUCGa -5'
23788 5' -63.1 NC_005261.1 + 86889 0.66 0.570547
Target:  5'- gGCCGCGCccugguccGCGCgCGGCGCGgacCcGCg -3'
miRNA:   3'- -CGGUGCGa-------CGCG-GCCGCGCac-GuCGa -5'
23788 5' -63.1 NC_005261.1 + 48631 0.66 0.56957
Target:  5'- cCCACGCcccgccccUGCGCCGGCccccgcccggagaGCcGcGCGGCa -3'
miRNA:   3'- cGGUGCG--------ACGCGGCCG-------------CG-CaCGUCGa -5'
23788 5' -63.1 NC_005261.1 + 90882 0.66 0.56957
Target:  5'- -gCGCGCUGgGCgacggcaUGGCGCGgcaggucucgGCGGCg -3'
miRNA:   3'- cgGUGCGACgCG-------GCCGCGCa---------CGUCGa -5'
23788 5' -63.1 NC_005261.1 + 66448 0.66 0.564693
Target:  5'- cGCgGCGC-GCGCCGccggucccgccaggcGCGCGUccucGCGGUa -3'
miRNA:   3'- -CGgUGCGaCGCGGC---------------CGCGCA----CGUCGa -5'
23788 5' -63.1 NC_005261.1 + 21653 0.66 0.560799
Target:  5'- cGCCGCuGCcGCaccGCCGGUaCGUGCuccGGCUg -3'
miRNA:   3'- -CGGUG-CGaCG---CGGCCGcGCACG---UCGA- -5'
23788 5' -63.1 NC_005261.1 + 101106 0.66 0.560799
Target:  5'- gGCCGCGC-GCGCCuuGGCGCccucGUGGUc -3'
miRNA:   3'- -CGGUGCGaCGCGG--CCGCGca--CGUCGa -5'
23788 5' -63.1 NC_005261.1 + 105569 0.66 0.560799
Target:  5'- gGCCagguACGCguagaGgGCCucggGGCGCGUGCGcGCg -3'
miRNA:   3'- -CGG----UGCGa----CgCGG----CCGCGCACGU-CGa -5'
23788 5' -63.1 NC_005261.1 + 21815 0.66 0.560799
Target:  5'- gGCCGgGCccGCGgCGggcGCGCGUGCgGGCg -3'
miRNA:   3'- -CGGUgCGa-CGCgGC---CGCGCACG-UCGa -5'
23788 5' -63.1 NC_005261.1 + 49451 0.66 0.560799
Target:  5'- cCCGCGC-GCGCCgcggaaggcgGGCGCGcagGCcGCg -3'
miRNA:   3'- cGGUGCGaCGCGG----------CCGCGCa--CGuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.