miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23789 5' -59.3 NC_005261.1 + 44033 0.66 0.743256
Target:  5'- cGGCCGCCGCGCGgcggCCGcGGGcgGGc- -3'
miRNA:   3'- uCCGGUGGUGCGCg---GGC-CUCaaCUua -5'
23789 5' -59.3 NC_005261.1 + 23164 0.66 0.743256
Target:  5'- uGGGcCCGgCAgGCGCgCCGGGGgcGAc- -3'
miRNA:   3'- -UCC-GGUgGUgCGCG-GGCCUCaaCUua -5'
23789 5' -59.3 NC_005261.1 + 3824 0.66 0.743256
Target:  5'- -cGCUGCCGCGgGCCCGGGcGcUGGc- -3'
miRNA:   3'- ucCGGUGGUGCgCGGGCCU-CaACUua -5'
23789 5' -59.3 NC_005261.1 + 132078 0.66 0.743256
Target:  5'- cGGCCGCCGuCGCcgcuGCCgCGGAGg----- -3'
miRNA:   3'- uCCGGUGGU-GCG----CGG-GCCUCaacuua -5'
23789 5' -59.3 NC_005261.1 + 32316 0.66 0.742289
Target:  5'- -cGCCGCCGCggccgcgGCGCCCGGcGUggccUGGGa -3'
miRNA:   3'- ucCGGUGGUG-------CGCGGGCCuCA----ACUUa -5'
23789 5' -59.3 NC_005261.1 + 13424 0.66 0.733544
Target:  5'- aAGGCgCACCGCGCGUcgaCCGG-GUg---- -3'
miRNA:   3'- -UCCG-GUGGUGCGCG---GGCCuCAacuua -5'
23789 5' -59.3 NC_005261.1 + 78357 0.66 0.733544
Target:  5'- cGGgCGCCACGCGCCCGc-------- -3'
miRNA:   3'- uCCgGUGGUGCGCGGGCcucaacuua -5'
23789 5' -59.3 NC_005261.1 + 124909 0.66 0.733544
Target:  5'- -cGCCGCCACGCgggaaGCCgCGGAGg----- -3'
miRNA:   3'- ucCGGUGGUGCG-----CGG-GCCUCaacuua -5'
23789 5' -59.3 NC_005261.1 + 60263 0.66 0.733544
Target:  5'- cGGCgGCCgugaagAgGCGCCCGGGGUc---- -3'
miRNA:   3'- uCCGgUGG------UgCGCGGGCCUCAacuua -5'
23789 5' -59.3 NC_005261.1 + 114997 0.66 0.733544
Target:  5'- cGGCCGCCGCG-GCCCcggccccgcGGAGg----- -3'
miRNA:   3'- uCCGGUGGUGCgCGGG---------CCUCaacuua -5'
23789 5' -59.3 NC_005261.1 + 107000 0.66 0.732568
Target:  5'- cGGCCagguccgccgagcGCCACGUGCCCaaGGAGcaGGGc -3'
miRNA:   3'- uCCGG-------------UGGUGCGCGGG--CCUCaaCUUa -5'
23789 5' -59.3 NC_005261.1 + 78168 0.66 0.723745
Target:  5'- cGGGCCACC-UGaggaGCCCGGGGc----- -3'
miRNA:   3'- -UCCGGUGGuGCg---CGGGCCUCaacuua -5'
23789 5' -59.3 NC_005261.1 + 92805 0.66 0.723745
Target:  5'- cGGUCGCCGgGCGCgCGGGcgUGGGa -3'
miRNA:   3'- uCCGGUGGUgCGCGgGCCUcaACUUa -5'
23789 5' -59.3 NC_005261.1 + 31129 0.66 0.723745
Target:  5'- cGGCUuccGCCGCGUgccGCCCGGGGa----- -3'
miRNA:   3'- uCCGG---UGGUGCG---CGGGCCUCaacuua -5'
23789 5' -59.3 NC_005261.1 + 28890 0.66 0.713868
Target:  5'- -cGCCGCCGCcuGCGCCCaacgcggaGGaAGUUGAc- -3'
miRNA:   3'- ucCGGUGGUG--CGCGGG--------CC-UCAACUua -5'
23789 5' -59.3 NC_005261.1 + 32180 0.66 0.713868
Target:  5'- uGGCCugCgggcgGCGCGCgCUGGAGcUGGc- -3'
miRNA:   3'- uCCGGugG-----UGCGCG-GGCCUCaACUua -5'
23789 5' -59.3 NC_005261.1 + 30555 0.66 0.703923
Target:  5'- gAGGCCGCCGcCGCcgggGCCuCGGAcGggGAc- -3'
miRNA:   3'- -UCCGGUGGU-GCG----CGG-GCCU-CaaCUua -5'
23789 5' -59.3 NC_005261.1 + 103107 0.66 0.703923
Target:  5'- cGGCCagcgcccccggcGCCAgCGCGCCCGG-GUUc--- -3'
miRNA:   3'- uCCGG------------UGGU-GCGCGGGCCuCAAcuua -5'
23789 5' -59.3 NC_005261.1 + 110593 0.66 0.703923
Target:  5'- cGGCCugCGCGUuCCUGGAcgUGGAc -3'
miRNA:   3'- uCCGGugGUGCGcGGGCCUcaACUUa -5'
23789 5' -59.3 NC_005261.1 + 75054 0.66 0.703923
Target:  5'- uGGCCaugguguacACCGCGCGCgCCGGcGggGGc- -3'
miRNA:   3'- uCCGG---------UGGUGCGCG-GGCCuCaaCUua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.