miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2379 3' -53.1 NC_001416.1 + 44980 0.66 0.776029
Target:  5'- gCGGGUGGCAGgaGGuCGCGCuaACAacCUCCUg -3'
miRNA:   3'- -GUUUACCGUCg-CU-GCGUG--UGU--GAGGG- -5'
2379 3' -53.1 NC_001416.1 + 33020 0.72 0.448366
Target:  5'- ---cUGGUAGUGACGCGCccaGCUCUg -3'
miRNA:   3'- guuuACCGUCGCUGCGUGug-UGAGGg -5'
2379 3' -53.1 NC_001416.1 + 22024 0.71 0.46879
Target:  5'- ---uUGGUgaaGGUGACGCAUAUAUUCCg -3'
miRNA:   3'- guuuACCG---UCGCUGCGUGUGUGAGGg -5'
2379 3' -53.1 NC_001416.1 + 20097 0.67 0.755124
Target:  5'- ---cUGaGCAGCuGAUGCACugGCaUCgCCg -3'
miRNA:   3'- guuuAC-CGUCG-CUGCGUGugUG-AG-GG- -5'
2379 3' -53.1 NC_001416.1 + 16973 0.68 0.660438
Target:  5'- ---cUGGCGGUgaacagccagacccgGACGCugACGCUCgaCCg -3'
miRNA:   3'- guuuACCGUCG---------------CUGCGugUGUGAG--GG- -5'
2379 3' -53.1 NC_001416.1 + 14954 0.66 0.796305
Target:  5'- ----gGGCGG-GACGUcaGCACUCCg -3'
miRNA:   3'- guuuaCCGUCgCUGCGugUGUGAGGg -5'
2379 3' -53.1 NC_001416.1 + 14883 0.67 0.755124
Target:  5'- ----gGGCAcUGGC-CACACAgCUCCCg -3'
miRNA:   3'- guuuaCCGUcGCUGcGUGUGU-GAGGG- -5'
2379 3' -53.1 NC_001416.1 + 14755 1.12 0.000801
Target:  5'- aCAAAUGGCAGCGACGCACACACUCCCu -3'
miRNA:   3'- -GUUUACCGUCGCUGCGUGUGUGAGGG- -5'
2379 3' -53.1 NC_001416.1 + 13618 0.68 0.689628
Target:  5'- uGAAUGGCAaaGGCaccaGUACGCGC-CCCa -3'
miRNA:   3'- gUUUACCGUcgCUG----CGUGUGUGaGGG- -5'
2379 3' -53.1 NC_001416.1 + 12524 0.67 0.751941
Target:  5'- --uAUGGCGGCGAUGCugACcggcagugagcagaACUggcgcagcuucaCCCg -3'
miRNA:   3'- guuUACCGUCGCUGCGugUG--------------UGA------------GGG- -5'
2379 3' -53.1 NC_001416.1 + 5492 0.67 0.711825
Target:  5'- ----cGGCuGCGcCGCGCugGCguucucgCCCu -3'
miRNA:   3'- guuuaCCGuCGCuGCGUGugUGa------GGG- -5'
2379 3' -53.1 NC_001416.1 + 4816 0.69 0.609582
Target:  5'- gGGAUGGUGGCGggggcauuugacuGCGCugACAUcaucgCCCg -3'
miRNA:   3'- gUUUACCGUCGC-------------UGCGugUGUGa----GGG- -5'
2379 3' -53.1 NC_001416.1 + 4575 0.71 0.500287
Target:  5'- cCAGGaGGCAcucGCGACGCugGCAUuaUCCg -3'
miRNA:   3'- -GUUUaCCGU---CGCUGCGugUGUG--AGGg -5'
2379 3' -53.1 NC_001416.1 + 2491 0.69 0.622011
Target:  5'- ---cUGGCGGCGcUGCGCAUcaguauUUCCCg -3'
miRNA:   3'- guuuACCGUCGCuGCGUGUGu-----GAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.