miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23790 3' -54.7 NC_005261.1 + 51928 0.66 0.948824
Target:  5'- cCG-CGGCCUggucccGCUCgUCGCCggcgccaccgACGACGc -3'
miRNA:   3'- -GCaGCUGGA------CGAGaAGCGGa---------UGCUGC- -5'
23790 3' -54.7 NC_005261.1 + 115104 0.66 0.939864
Target:  5'- uGUCGGCCUcgGCggcgCUgcccacggCGCCcACGAUGg -3'
miRNA:   3'- gCAGCUGGA--CGa---GAa-------GCGGaUGCUGC- -5'
23790 3' -54.7 NC_005261.1 + 97382 0.66 0.939864
Target:  5'- uGUCG-CCgcgcgGCUUUcgCGCCUGCcGCGg -3'
miRNA:   3'- gCAGCuGGa----CGAGAa-GCGGAUGcUGC- -5'
23790 3' -54.7 NC_005261.1 + 130692 0.66 0.939864
Target:  5'- gCG-CGugCUGCUCgagcaccUCGCCgAgGACGu -3'
miRNA:   3'- -GCaGCugGACGAGa------AGCGGaUgCUGC- -5'
23790 3' -54.7 NC_005261.1 + 21420 0.66 0.935027
Target:  5'- gCGcCGGCCggugcaGUUCUUcCGCCaacuuUACGACGg -3'
miRNA:   3'- -GCaGCUGGa-----CGAGAA-GCGG-----AUGCUGC- -5'
23790 3' -54.7 NC_005261.1 + 116662 0.66 0.929951
Target:  5'- cCGcCGACCUGCUCcgcggCGCCggcccaaucGCGAgCGc -3'
miRNA:   3'- -GCaGCUGGACGAGaa---GCGGa--------UGCU-GC- -5'
23790 3' -54.7 NC_005261.1 + 43146 0.67 0.924635
Target:  5'- gCG-CGGCCUGCg---CGCCgcCGACa -3'
miRNA:   3'- -GCaGCUGGACGagaaGCGGauGCUGc -5'
23790 3' -54.7 NC_005261.1 + 1290 0.67 0.924635
Target:  5'- ---aGGCCggcgggGCUCccgUCGCCgGCGGCGg -3'
miRNA:   3'- gcagCUGGa-----CGAGa--AGCGGaUGCUGC- -5'
23790 3' -54.7 NC_005261.1 + 135026 0.67 0.924635
Target:  5'- aCG-CGGCCgcgGCggCgaggccgaCGCCUGCGGCGg -3'
miRNA:   3'- -GCaGCUGGa--CGa-Gaa------GCGGAUGCUGC- -5'
23790 3' -54.7 NC_005261.1 + 73724 0.67 0.907246
Target:  5'- gGUCGGCgUGCg---CGCUUGCGcGCGg -3'
miRNA:   3'- gCAGCUGgACGagaaGCGGAUGC-UGC- -5'
23790 3' -54.7 NC_005261.1 + 134817 0.67 0.907246
Target:  5'- gCGaCGACCUGagcCUCUUCGgCUcCGACu -3'
miRNA:   3'- -GCaGCUGGAC---GAGAAGCgGAuGCUGc -5'
23790 3' -54.7 NC_005261.1 + 129862 0.67 0.907246
Target:  5'- aCGUCGGCCaucacgauguUGCUCUcggcCGCCaUGCgGAUGg -3'
miRNA:   3'- -GCAGCUGG----------ACGAGAa---GCGG-AUG-CUGC- -5'
23790 3' -54.7 NC_005261.1 + 53009 0.67 0.900974
Target:  5'- gCGUCGGCgCaGCUCgccagCGCUUccGCGGCGc -3'
miRNA:   3'- -GCAGCUG-GaCGAGaa---GCGGA--UGCUGC- -5'
23790 3' -54.7 NC_005261.1 + 91093 0.68 0.887732
Target:  5'- gGUCGACgUGCUCa-UGCacgACGACGc -3'
miRNA:   3'- gCAGCUGgACGAGaaGCGga-UGCUGC- -5'
23790 3' -54.7 NC_005261.1 + 114529 0.68 0.887732
Target:  5'- gCGUCGugCUGCaUCUUCaacaacuaCCU-CGGCGg -3'
miRNA:   3'- -GCAGCugGACG-AGAAGc-------GGAuGCUGC- -5'
23790 3' -54.7 NC_005261.1 + 67946 0.68 0.887732
Target:  5'- cCGcCGGCCcGCUCgcgcggcCGCCgcgGCGAUGg -3'
miRNA:   3'- -GCaGCUGGaCGAGaa-----GCGGa--UGCUGC- -5'
23790 3' -54.7 NC_005261.1 + 12789 0.68 0.858566
Target:  5'- uCGUCGGCgaGCUCgUCGUCgGCGuCGc -3'
miRNA:   3'- -GCAGCUGgaCGAGaAGCGGaUGCuGC- -5'
23790 3' -54.7 NC_005261.1 + 2730 0.69 0.850745
Target:  5'- gGcCGACUUGCgCUUgCGCC-GCGGCGg -3'
miRNA:   3'- gCaGCUGGACGaGAA-GCGGaUGCUGC- -5'
23790 3' -54.7 NC_005261.1 + 112546 0.69 0.842725
Target:  5'- ---gGACCUGCUCUucgaccgcuaccUCGCCUACcuCGa -3'
miRNA:   3'- gcagCUGGACGAGA------------AGCGGAUGcuGC- -5'
23790 3' -54.7 NC_005261.1 + 62360 0.69 0.826115
Target:  5'- aCGcgCGccACCaGCUCgcgCGCCUGCGGCa -3'
miRNA:   3'- -GCa-GC--UGGaCGAGaa-GCGGAUGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.