miRNA display CGI


Results 1 - 20 of 439 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23790 5' -63.5 NC_005261.1 + 83370 0.66 0.600455
Target:  5'- uCCaCGUCGGCGagCGCgGCGAgcgcggccucGGCCGAg -3'
miRNA:   3'- -GG-GCGGCCGUggGCGaUGCU----------CCGGCU- -5'
23790 5' -63.5 NC_005261.1 + 39219 0.66 0.600455
Target:  5'- gCCGCCauGGCcCUCGCgcgcgccgGCGAGGUCu- -3'
miRNA:   3'- gGGCGG--CCGuGGGCGa-------UGCUCCGGcu -5'
23790 5' -63.5 NC_005261.1 + 58092 0.66 0.600455
Target:  5'- gCCCGCguccucgggCGGCACcagCCGC-GCGAGcagccuGCCGAg -3'
miRNA:   3'- -GGGCG---------GCCGUG---GGCGaUGCUC------CGGCU- -5'
23790 5' -63.5 NC_005261.1 + 14988 0.66 0.600455
Target:  5'- gCCgCGCCGGCcgcGCCCGgaGCGcGGGagGAg -3'
miRNA:   3'- -GG-GCGGCCG---UGGGCgaUGC-UCCggCU- -5'
23790 5' -63.5 NC_005261.1 + 22832 0.66 0.600455
Target:  5'- gCCGuuGGCGCCgGgCU-CGGGGaaGAa -3'
miRNA:   3'- gGGCggCCGUGGgC-GAuGCUCCggCU- -5'
23790 5' -63.5 NC_005261.1 + 59536 0.66 0.600455
Target:  5'- cCCCGCCGcCACCgCGC-GCG-GGCUu- -3'
miRNA:   3'- -GGGCGGCcGUGG-GCGaUGCuCCGGcu -5'
23790 5' -63.5 NC_005261.1 + 13779 0.66 0.600455
Target:  5'- cCCCGCCcuCGCCCuGCccgGCGGGGUCc- -3'
miRNA:   3'- -GGGCGGccGUGGG-CGa--UGCUCCGGcu -5'
23790 5' -63.5 NC_005261.1 + 5982 0.66 0.600455
Target:  5'- cUCUGCCGcGCGucuccgcuccuCCCGCgGCGAGGgcuCCGGc -3'
miRNA:   3'- -GGGCGGC-CGU-----------GGGCGaUGCUCC---GGCU- -5'
23790 5' -63.5 NC_005261.1 + 123571 0.66 0.600455
Target:  5'- -aCGCCGGCccccguACaCCGCUGCGccGGCUa- -3'
miRNA:   3'- ggGCGGCCG------UG-GGCGAUGCu-CCGGcu -5'
23790 5' -63.5 NC_005261.1 + 133026 0.66 0.594666
Target:  5'- aCCCGCgGGCGCgCCaccgcgcacgcacguGCUGCGcGGCg-- -3'
miRNA:   3'- -GGGCGgCCGUG-GG---------------CGAUGCuCCGgcu -5'
23790 5' -63.5 NC_005261.1 + 123939 0.66 0.594666
Target:  5'- gCCCGCuagauacagccagcgCaGCGCCCGCUccGCGAGcGCUa- -3'
miRNA:   3'- -GGGCG---------------GcCGUGGGCGA--UGCUC-CGGcu -5'
23790 5' -63.5 NC_005261.1 + 88212 0.66 0.590812
Target:  5'- -gCGCCGGCAa--GC-GCGcGGCCGAg -3'
miRNA:   3'- ggGCGGCCGUgggCGaUGCuCCGGCU- -5'
23790 5' -63.5 NC_005261.1 + 20129 0.66 0.590812
Target:  5'- gCCCGCagCGGC-UCCGCgaGCGcucAGGCCGc -3'
miRNA:   3'- -GGGCG--GCCGuGGGCGa-UGC---UCCGGCu -5'
23790 5' -63.5 NC_005261.1 + 48018 0.66 0.590812
Target:  5'- cCCCGCCGGCAga-GCaggGCGAGGagcaCGc -3'
miRNA:   3'- -GGGCGGCCGUgggCGa--UGCUCCg---GCu -5'
23790 5' -63.5 NC_005261.1 + 102816 0.66 0.590812
Target:  5'- gCCGCCGcGCGCCgGuCUGCGccucGcGCCGc -3'
miRNA:   3'- gGGCGGC-CGUGGgC-GAUGCu---C-CGGCu -5'
23790 5' -63.5 NC_005261.1 + 31868 0.66 0.590812
Target:  5'- uUCGggcCCGGCGCCuucgcgCGCgcCGAGGCCGc -3'
miRNA:   3'- gGGC---GGCCGUGG------GCGauGCUCCGGCu -5'
23790 5' -63.5 NC_005261.1 + 87607 0.66 0.590812
Target:  5'- -gUGCCGGCGaccaCCGCgACGuuGGGCgCGAa -3'
miRNA:   3'- ggGCGGCCGUg---GGCGaUGC--UCCG-GCU- -5'
23790 5' -63.5 NC_005261.1 + 40259 0.66 0.590812
Target:  5'- gCCaUGgCGGCGgCCGCgGCGGGGCUc- -3'
miRNA:   3'- -GG-GCgGCCGUgGGCGaUGCUCCGGcu -5'
23790 5' -63.5 NC_005261.1 + 2582 0.66 0.590812
Target:  5'- cCCCgGgCGGCACgcggcggaagCCGCcgucggcgGCGGGGCCGc -3'
miRNA:   3'- -GGG-CgGCCGUG----------GGCGa-------UGCUCCGGCu -5'
23790 5' -63.5 NC_005261.1 + 45936 0.66 0.581196
Target:  5'- cCCCGCCGcGCGCgagggCCGCca-GGGcGCCGu -3'
miRNA:   3'- -GGGCGGC-CGUG-----GGCGaugCUC-CGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.