miRNA display CGI


Results 1 - 20 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23791 3' -55 NC_005261.1 + 103921 0.65 0.936151
Target:  5'- gCCAGGUcgGGCGCGgcgucugccaGACGCuGCagCGGCg -3'
miRNA:   3'- -GGUCCA--CCGUGUag--------CUGCG-CGa-GUUG- -5'
23791 3' -55 NC_005261.1 + 2498 0.65 0.936151
Target:  5'- gCGGGUGGU-CcgCGAgcCGCGCcgCGACc -3'
miRNA:   3'- gGUCCACCGuGuaGCU--GCGCGa-GUUG- -5'
23791 3' -55 NC_005261.1 + 83544 0.65 0.936151
Target:  5'- cCCAuGGUGcGCGCGaagaacUCGGCGgGCgugcccgCGGCg -3'
miRNA:   3'- -GGU-CCAC-CGUGU------AGCUGCgCGa------GUUG- -5'
23791 3' -55 NC_005261.1 + 98307 0.65 0.934156
Target:  5'- cUCGGGggcgGGCGCcgccgccagcggCGGCGCGCcccgugUCGACg -3'
miRNA:   3'- -GGUCCa---CCGUGua----------GCUGCGCG------AGUUG- -5'
23791 3' -55 NC_005261.1 + 93838 0.66 0.933143
Target:  5'- gCCGGGcGGCGCcgCcgagcaguccacgaGGCGCGCgcacuccuuccagcUCAGCa -3'
miRNA:   3'- -GGUCCaCCGUGuaG--------------CUGCGCG--------------AGUUG- -5'
23791 3' -55 NC_005261.1 + 96945 0.66 0.93109
Target:  5'- cCCAcG-GGCGCAUCGGCGgGg-CAGCc -3'
miRNA:   3'- -GGUcCaCCGUGUAGCUGCgCgaGUUG- -5'
23791 3' -55 NC_005261.1 + 97010 0.66 0.93109
Target:  5'- gCCAuuGGgcgGGC-CGUCgGGCGCGCcCGGCc -3'
miRNA:   3'- -GGU--CCa--CCGuGUAG-CUGCGCGaGUUG- -5'
23791 3' -55 NC_005261.1 + 97726 0.66 0.93109
Target:  5'- cCCGGGcgggcuaacggcUGGCAgGggcggGGCGgGCUCGGCg -3'
miRNA:   3'- -GGUCC------------ACCGUgUag---CUGCgCGAGUUG- -5'
23791 3' -55 NC_005261.1 + 126945 0.66 0.93109
Target:  5'- gCCAGGggcgccgGGCGCGggggCGGCaGCGCg-AACc -3'
miRNA:   3'- -GGUCCa------CCGUGUa---GCUG-CGCGagUUG- -5'
23791 3' -55 NC_005261.1 + 70817 0.66 0.93109
Target:  5'- gCCGGcGgccccgGGCGCGcCGGCGCGCgcguACg -3'
miRNA:   3'- -GGUC-Ca-----CCGUGUaGCUGCGCGagu-UG- -5'
23791 3' -55 NC_005261.1 + 62806 0.66 0.93109
Target:  5'- uUCGGGcugGGcCAUAUCGcCGCGCggGGCa -3'
miRNA:   3'- -GGUCCa--CC-GUGUAGCuGCGCGagUUG- -5'
23791 3' -55 NC_005261.1 + 30106 0.66 0.927401
Target:  5'- uCCGGGcagcugagcugcuUGGCGCGgcccgCGACGCGguggagcgcgcgcgcCUUAGCg -3'
miRNA:   3'- -GGUCC-------------ACCGUGUa----GCUGCGC---------------GAGUUG- -5'
23791 3' -55 NC_005261.1 + 58886 0.66 0.925784
Target:  5'- uCCGGGcgGGCcucGCAggCG-CGCGC-CAGCg -3'
miRNA:   3'- -GGUCCa-CCG---UGUa-GCuGCGCGaGUUG- -5'
23791 3' -55 NC_005261.1 + 99225 0.66 0.925784
Target:  5'- aCCGcGGcaGGCGCGUCGGCGuCGCg---- -3'
miRNA:   3'- -GGU-CCa-CCGUGUAGCUGC-GCGaguug -5'
23791 3' -55 NC_005261.1 + 115834 0.66 0.925784
Target:  5'- gCCAGcuugGGCGCGUUGGCcCGCgCGGCc -3'
miRNA:   3'- -GGUCca--CCGUGUAGCUGcGCGaGUUG- -5'
23791 3' -55 NC_005261.1 + 110208 0.66 0.925784
Target:  5'- -gAGGccUGGCGCAaccUCGGCGaCGCcucCAGCg -3'
miRNA:   3'- ggUCC--ACCGUGU---AGCUGC-GCGa--GUUG- -5'
23791 3' -55 NC_005261.1 + 59085 0.66 0.925784
Target:  5'- gCGGGU-GCGCcgCGcccuCGCGCUCGcagGCg -3'
miRNA:   3'- gGUCCAcCGUGuaGCu---GCGCGAGU---UG- -5'
23791 3' -55 NC_005261.1 + 14852 0.66 0.925784
Target:  5'- gCAGGcggcGGCGCAUCG-CGCaGUUCGc- -3'
miRNA:   3'- gGUCCa---CCGUGUAGCuGCG-CGAGUug -5'
23791 3' -55 NC_005261.1 + 53464 0.66 0.925784
Target:  5'- gCCGGGcgGGaCGCAgcaGGCGCGCacUAGCg -3'
miRNA:   3'- -GGUCCa-CC-GUGUag-CUGCGCGa-GUUG- -5'
23791 3' -55 NC_005261.1 + 40721 0.66 0.920234
Target:  5'- gCgAGGggGGCGCGUgGGCGUaGCccaUCAGCg -3'
miRNA:   3'- -GgUCCa-CCGUGUAgCUGCG-CG---AGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.