miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23791 5' -62.2 NC_005261.1 + 99229 0.66 0.595221
Target:  5'- cGGCa-GGCGCGU-CGGCGUcGcGCCCg -3'
miRNA:   3'- cUCGgcCCGCGCAcGCUGCA-CaCGGG- -5'
23791 5' -62.2 NC_005261.1 + 97749 0.66 0.624703
Target:  5'- gGGGCgGGGCGgGcucgGCGGCGcG-GCCg -3'
miRNA:   3'- -CUCGgCCCGCgCa---CGCUGCaCaCGGg -5'
23791 5' -62.2 NC_005261.1 + 60703 0.66 0.614861
Target:  5'- -cGCCGcGCGUGgcgGCGcACGgcgGUGCCa -3'
miRNA:   3'- cuCGGCcCGCGCa--CGC-UGCa--CACGGg -5'
23791 5' -62.2 NC_005261.1 + 17167 0.66 0.614861
Target:  5'- --cCCGcGGCGCGgGCGugGgcaGCCCu -3'
miRNA:   3'- cucGGC-CCGCGCaCGCugCacaCGGG- -5'
23791 5' -62.2 NC_005261.1 + 120937 0.66 0.605032
Target:  5'- -cGCCGGGCGCG-G-GAagGUGgagGCUCg -3'
miRNA:   3'- cuCGGCCCGCGCaCgCUg-CACa--CGGG- -5'
23791 5' -62.2 NC_005261.1 + 87903 0.66 0.605032
Target:  5'- cGGGCCGGGCGUac----CGUGUGUCUg -3'
miRNA:   3'- -CUCGGCCCGCGcacgcuGCACACGGG- -5'
23791 5' -62.2 NC_005261.1 + 72330 0.66 0.644394
Target:  5'- cGGCCcaaGGCaGUGgaugGCGaACGUGUGCaCCg -3'
miRNA:   3'- cUCGGc--CCG-CGCa---CGC-UGCACACG-GG- -5'
23791 5' -62.2 NC_005261.1 + 13129 0.66 0.614861
Target:  5'- -cGCgGGGCGCGUGUGGuCgGUGacgGCgCg -3'
miRNA:   3'- cuCGgCCCGCGCACGCU-G-CACa--CGgG- -5'
23791 5' -62.2 NC_005261.1 + 29955 0.66 0.614861
Target:  5'- -uGCCGcgaGGCGCuagagGCGGCGcgGUGCgCCg -3'
miRNA:   3'- cuCGGC---CCGCGca---CGCUGCa-CACG-GG- -5'
23791 5' -62.2 NC_005261.1 + 99454 0.66 0.605032
Target:  5'- aGAGCgCGGGCcgacccGCG-GCGGCGcUG-GCCg -3'
miRNA:   3'- -CUCG-GCCCG------CGCaCGCUGC-ACaCGGg -5'
23791 5' -62.2 NC_005261.1 + 37275 0.66 0.614861
Target:  5'- cGAGCCGuGcCGCG-GCGACcUGUuGCUCg -3'
miRNA:   3'- -CUCGGCcC-GCGCaCGCUGcACA-CGGG- -5'
23791 5' -62.2 NC_005261.1 + 73481 0.66 0.595221
Target:  5'- uGGGCCGcGGCGCGgcgcgcggacGCGGCGaGgauCCCa -3'
miRNA:   3'- -CUCGGC-CCGCGCa---------CGCUGCaCac-GGG- -5'
23791 5' -62.2 NC_005261.1 + 30772 0.66 0.595221
Target:  5'- cGGGCCGGaGCcCGgccGCGGCGguggagGUGCUg -3'
miRNA:   3'- -CUCGGCC-CGcGCa--CGCUGCa-----CACGGg -5'
23791 5' -62.2 NC_005261.1 + 29801 0.66 0.605032
Target:  5'- aGGCCGGcGC-CG-GCGGCGcggGcGCCCg -3'
miRNA:   3'- cUCGGCC-CGcGCaCGCUGCa--CaCGGG- -5'
23791 5' -62.2 NC_005261.1 + 59258 0.66 0.595221
Target:  5'- -cGCCGGcGCcacGCGUcgcaCGGCGUGUcgccGCCCa -3'
miRNA:   3'- cuCGGCC-CG---CGCAc---GCUGCACA----CGGG- -5'
23791 5' -62.2 NC_005261.1 + 128125 0.66 0.595221
Target:  5'- cGGGCCGaGUGCGgagagagGCGACG-GUcGCCg -3'
miRNA:   3'- -CUCGGCcCGCGCa------CGCUGCaCA-CGGg -5'
23791 5' -62.2 NC_005261.1 + 38942 0.66 0.595221
Target:  5'- cGGCCGGGCGgGccGCGGCGcGcggGCUg -3'
miRNA:   3'- cUCGGCCCGCgCa-CGCUGCaCa--CGGg -5'
23791 5' -62.2 NC_005261.1 + 41187 0.66 0.592282
Target:  5'- aGGCCGGGCGUGcGCaaaaaguuguaaaaGGCGaucaUGCCCc -3'
miRNA:   3'- cUCGGCCCGCGCaCG--------------CUGCac--ACGGG- -5'
23791 5' -62.2 NC_005261.1 + 37942 0.66 0.614861
Target:  5'- -cGCCGGaGcCGCGUcgaGCGG-GUGcUGCCCc -3'
miRNA:   3'- cuCGGCC-C-GCGCA---CGCUgCAC-ACGGG- -5'
23791 5' -62.2 NC_005261.1 + 127103 0.66 0.605032
Target:  5'- cGGCUGGGCGCGgugacccGCGauuuuuauGCGcGcGCCCg -3'
miRNA:   3'- cUCGGCCCGCGCa------CGC--------UGCaCaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.