miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23792 3' -51.9 NC_005261.1 + 502 0.66 0.988427
Target:  5'- -aGg--GGGAGgGAGAGGGGGGgagggCGCg -3'
miRNA:   3'- ggCagaCCCUUgCUCUUCCUCUa----GUG- -5'
23792 3' -51.9 NC_005261.1 + 26828 0.66 0.988427
Target:  5'- cCUGcUCUGGGAGgGGGGcgguGGGcGGUCAa -3'
miRNA:   3'- -GGC-AGACCCUUgCUCU----UCCuCUAGUg -5'
23792 3' -51.9 NC_005261.1 + 138173 0.66 0.988427
Target:  5'- -aGg--GGGAGgGAGAGGGGGGgagggCGCg -3'
miRNA:   3'- ggCagaCCCUUgCUCUUCCUCUa----GUG- -5'
23792 3' -51.9 NC_005261.1 + 78410 0.66 0.987979
Target:  5'- uCCGUgCUcugugggcgaugggGGGGGCGAuGGGGAGAagGCg -3'
miRNA:   3'- -GGCA-GA--------------CCCUUGCUcUUCCUCUagUG- -5'
23792 3' -51.9 NC_005261.1 + 117774 0.66 0.986882
Target:  5'- uCCGgaucGGGGCGGGGAGGAGGgagGCg -3'
miRNA:   3'- -GGCagacCCUUGCUCUUCCUCUag-UG- -5'
23792 3' -51.9 NC_005261.1 + 33004 0.66 0.986882
Target:  5'- gCCGaCcGGGGAaggGGGGAGGGGggCGCc -3'
miRNA:   3'- -GGCaGaCCCUUg--CUCUUCCUCuaGUG- -5'
23792 3' -51.9 NC_005261.1 + 84105 0.66 0.986882
Target:  5'- aCGggggcGGGAugGGGAGGGGGGcagcgggcggggUCGCu -3'
miRNA:   3'- gGCaga--CCCUugCUCUUCCUCU------------AGUG- -5'
23792 3' -51.9 NC_005261.1 + 94909 0.66 0.985182
Target:  5'- gCG-CUGGaGGCGAgGAAGGAGcgcuUCGCg -3'
miRNA:   3'- gGCaGACCcUUGCU-CUUCCUCu---AGUG- -5'
23792 3' -51.9 NC_005261.1 + 11080 0.66 0.98332
Target:  5'- gCGUCUaGGGACGGGAcgGGGcGGGaCGCg -3'
miRNA:   3'- gGCAGAcCCUUGCUCU--UCC-UCUaGUG- -5'
23792 3' -51.9 NC_005261.1 + 78471 0.66 0.98332
Target:  5'- ----gUGGGGGCGAGggGGGaAUCGg -3'
miRNA:   3'- ggcagACCCUUGCUCuuCCUcUAGUg -5'
23792 3' -51.9 NC_005261.1 + 58298 0.66 0.98332
Target:  5'- gCCGgg-GGGcGCGGGGAGGGGGcgGCc -3'
miRNA:   3'- -GGCagaCCCuUGCUCUUCCUCUagUG- -5'
23792 3' -51.9 NC_005261.1 + 25396 0.66 0.981287
Target:  5'- -gGUCgGGGGAgGAGAGGGuGAggggCAg -3'
miRNA:   3'- ggCAGaCCCUUgCUCUUCCuCUa---GUg -5'
23792 3' -51.9 NC_005261.1 + 56001 0.67 0.97667
Target:  5'- aCCG-CggcGGGGGCGGGGGcGGGGAagACg -3'
miRNA:   3'- -GGCaGa--CCCUUGCUCUU-CCUCUagUG- -5'
23792 3' -51.9 NC_005261.1 + 470 0.67 0.974072
Target:  5'- gCCGgc-GGGAuggcGCGGGGAGGAGAg--- -3'
miRNA:   3'- -GGCagaCCCU----UGCUCUUCCUCUagug -5'
23792 3' -51.9 NC_005261.1 + 138141 0.67 0.974072
Target:  5'- gCCGgc-GGGAuggcGCGGGGAGGAGAg--- -3'
miRNA:   3'- -GGCagaCCCU----UGCUCUUCCUCUagug -5'
23792 3' -51.9 NC_005261.1 + 81344 0.67 0.971269
Target:  5'- gCCGUCgGcGGGGCGGGGGcuugcGGGGggCGCc -3'
miRNA:   3'- -GGCAGaC-CCUUGCUCUU-----CCUCuaGUG- -5'
23792 3' -51.9 NC_005261.1 + 11331 0.67 0.971269
Target:  5'- -gGUg-GGGGugGGGAGGGAGggCAg -3'
miRNA:   3'- ggCAgaCCCUugCUCUUCCUCuaGUg -5'
23792 3' -51.9 NC_005261.1 + 28021 0.68 0.965022
Target:  5'- gCCGgc-GGGGAgGAGAGGGAGGg--- -3'
miRNA:   3'- -GGCagaCCCUUgCUCUUCCUCUagug -5'
23792 3' -51.9 NC_005261.1 + 22092 0.68 0.961566
Target:  5'- gCCGcgUGGGGGCGGGAGGGcGGUgUGCg -3'
miRNA:   3'- -GGCagACCCUUGCUCUUCCuCUA-GUG- -5'
23792 3' -51.9 NC_005261.1 + 15036 0.68 0.95788
Target:  5'- gCCGg--GGGcguAGCGGGggGGgucgGGGUCGCg -3'
miRNA:   3'- -GGCagaCCC---UUGCUCuuCC----UCUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.