Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23792 | 3' | -51.9 | NC_005261.1 | + | 22769 | 0.84 | 0.244798 |
Target: 5'- gCGUCUGGGGgcgggccccGCGAGAAGGGGGuugUCGCg -3' miRNA: 3'- gGCAGACCCU---------UGCUCUUCCUCU---AGUG- -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 110523 | 0.74 | 0.739901 |
Target: 5'- gUCGUCUGcGGGGCGcAGGAGGGcGcgCGCa -3' miRNA: 3'- -GGCAGAC-CCUUGC-UCUUCCU-CuaGUG- -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 57188 | 0.73 | 0.769368 |
Target: 5'- -gGUCggcGGGAAgGGGggGGGGggCGCg -3' miRNA: 3'- ggCAGa--CCCUUgCUCuuCCUCuaGUG- -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 134380 | 0.69 | 0.935847 |
Target: 5'- gCCG-CUGGcGAcgGCGAGAGcGGGAUCAg -3' miRNA: 3'- -GGCaGACC-CU--UGCUCUUcCUCUAGUg -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 32935 | 0.69 | 0.935847 |
Target: 5'- gCGggggGGGGGCGGGGAGGGGAg--- -3' miRNA: 3'- gGCaga-CCCUUGCUCUUCCUCUagug -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 13707 | 0.69 | 0.91965 |
Target: 5'- gCGggCUGGGGGCGGGGGuGGGGGUgGg -3' miRNA: 3'- gGCa-GACCCUUGCUCUU-CCUCUAgUg -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 15036 | 0.68 | 0.95788 |
Target: 5'- gCCGg--GGGcguAGCGGGggGGgucgGGGUCGCg -3' miRNA: 3'- -GGCagaCCC---UUGCUCuuCC----UCUAGUG- -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 22092 | 0.68 | 0.961566 |
Target: 5'- gCCGcgUGGGGGCGGGAGGGcGGUgUGCg -3' miRNA: 3'- -GGCagACCCUUGCUCUUCCuCUA-GUG- -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 28021 | 0.68 | 0.965022 |
Target: 5'- gCCGgc-GGGGAgGAGAGGGAGGg--- -3' miRNA: 3'- -GGCagaCCCUUgCUCUUCCUCUagug -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 56001 | 0.67 | 0.97667 |
Target: 5'- aCCG-CggcGGGGGCGGGGGcGGGGAagACg -3' miRNA: 3'- -GGCaGa--CCCUUGCUCUU-CCUCUagUG- -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 138141 | 0.67 | 0.974072 |
Target: 5'- gCCGgc-GGGAuggcGCGGGGAGGAGAg--- -3' miRNA: 3'- -GGCagaCCCU----UGCUCUUCCUCUagug -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 470 | 0.67 | 0.974072 |
Target: 5'- gCCGgc-GGGAuggcGCGGGGAGGAGAg--- -3' miRNA: 3'- -GGCagaCCCU----UGCUCUUCCUCUagug -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 81344 | 0.67 | 0.971269 |
Target: 5'- gCCGUCgGcGGGGCGGGGGcuugcGGGGggCGCc -3' miRNA: 3'- -GGCAGaC-CCUUGCUCUU-----CCUCuaGUG- -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 11331 | 0.67 | 0.971269 |
Target: 5'- -gGUg-GGGGugGGGAGGGAGggCAg -3' miRNA: 3'- ggCAgaCCCUugCUCUUCCUCuaGUg -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 138173 | 0.66 | 0.988427 |
Target: 5'- -aGg--GGGAGgGAGAGGGGGGgagggCGCg -3' miRNA: 3'- ggCagaCCCUUgCUCUUCCUCUa----GUG- -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 58298 | 0.66 | 0.98332 |
Target: 5'- gCCGgg-GGGcGCGGGGAGGGGGcgGCc -3' miRNA: 3'- -GGCagaCCCuUGCUCUUCCUCUagUG- -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 78471 | 0.66 | 0.98332 |
Target: 5'- ----gUGGGGGCGAGggGGGaAUCGg -3' miRNA: 3'- ggcagACCCUUGCUCuuCCUcUAGUg -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 11080 | 0.66 | 0.98332 |
Target: 5'- gCGUCUaGGGACGGGAcgGGGcGGGaCGCg -3' miRNA: 3'- gGCAGAcCCUUGCUCU--UCC-UCUaGUG- -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 94909 | 0.66 | 0.985182 |
Target: 5'- gCG-CUGGaGGCGAgGAAGGAGcgcuUCGCg -3' miRNA: 3'- gGCaGACCcUUGCU-CUUCCUCu---AGUG- -5' |
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23792 | 3' | -51.9 | NC_005261.1 | + | 33004 | 0.66 | 0.986882 |
Target: 5'- gCCGaCcGGGGAaggGGGGAGGGGggCGCc -3' miRNA: 3'- -GGCaGaCCCUUg--CUCUUCCUCuaGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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