Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23792 | 3' | -51.9 | NC_005261.1 | + | 94909 | 0.66 | 0.985182 |
|
Target: 5'- gCG-CUGGaGGCGAgGAAGGAGcgcuUCGCg -3' miRNA: 3'- gGCaGACCcUUGCU-CUUCCUCu---AGUG- -5' |
|||||||
| 23792 | 3' | -51.9 | NC_005261.1 | + | 110523 | 0.74 | 0.739901 |
|
Target: 5'- gUCGUCUGcGGGGCGcAGGAGGGcGcgCGCa -3' miRNA: 3'- -GGCAGAC-CCUUGC-UCUUCCU-CuaGUG- -5' |
|||||||
| 23792 | 3' | -51.9 | NC_005261.1 | + | 117774 | 0.66 | 0.986882 |
|
Target: 5'- uCCGgaucGGGGCGGGGAGGAGGgagGCg -3' miRNA: 3'- -GGCagacCCUUGCUCUUCCUCUag-UG- -5' |
|||||||
| 23792 | 3' | -51.9 | NC_005261.1 | + | 134380 | 0.69 | 0.935847 |
|
Target: 5'- gCCG-CUGGcGAcgGCGAGAGcGGGAUCAg -3' miRNA: 3'- -GGCaGACC-CU--UGCUCUUcCUCUAGUg -5' |
|||||||
| 23792 | 3' | -51.9 | NC_005261.1 | + | 138141 | 0.67 | 0.974072 |
|
Target: 5'- gCCGgc-GGGAuggcGCGGGGAGGAGAg--- -3' miRNA: 3'- -GGCagaCCCU----UGCUCUUCCUCUagug -5' |
|||||||
| 23792 | 3' | -51.9 | NC_005261.1 | + | 138173 | 0.66 | 0.988427 |
|
Target: 5'- -aGg--GGGAGgGAGAGGGGGGgagggCGCg -3' miRNA: 3'- ggCagaCCCUUgCUCUUCCUCUa----GUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home